chore: make Dockerfiles independent from each other (#28)

.github/workflows/publish_docker.yml

@@ -89,7 +89,6 @@ jobs:
       run: |
         docker build \
         -t ${{ env.tag }}-workflows \
-        --build-arg BASE_IMAGE=${{ env.tag }} \
         -f Dockerfile.workflows \
         .
 

Dockerfile.workflows

@@ -1,8 +1,67 @@
-# Given by .github/workflows/publish_docker.yml
-# For now takes the ./Dockerfile image url (tag)
-ARG BASE_IMAGE
+# Modified by .github/workflows/publish_docker.yml
+ARG CUDA_IMAGE=nvidia/cuda:9.2-base-ubuntu18.04
+FROM $CUDA_IMAGE
 
-FROM $BASE_IMAGE
+# Modified by .github/workflows/publish_docker.yml
+ARG PYTHON_VERSION=3.7
+
+ARG USER_ID=1001
+ARG GROUP_ID=1001
+ARG USER_NAME=sandbox
+ARG GROUP_NAME=sandbox
+ARG HOME_DIR=/sandbox
+
+COPY ./setup.py /tmp
+COPY ./README.md /tmp
+COPY ./substratools /tmp/substratools
+
+# need the 3 first lines to get python${PYTHON_VERSION} on all ubuntu versions
+RUN apt-get update \
+ && apt-get install -y software-properties-common \
+ && add-apt-repository ppa:deadsnakes/ppa \
+# needed for tzdata, installed by python3.9
+ && export DEBIAN_FRONTEND=noninteractive \
+ && export TZ=Europe/Moscow \
+# install essential apps
+ && apt-get install -y \
+    build-essential \
+    libssl-dev \
+    python${PYTHON_VERSION} \
+    libpython${PYTHON_VERSION}-dev \
+    python${PYTHON_VERSION}-distutils \
+    python3-pip \
+# needed for pillow
+ && apt-get install -y libjpeg-dev zlib1g-dev \
+# clean the apt cache
+ && rm -rf /var/lib/apt/lists/ \
+ # link default python, python3, pip, pip3 to python${PYTHON_VERSION}
+ && rm -f /usr/bin/python \
+ && ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python \
+ && rm -f /usr/bin/python3 \
+ && ln -s /usr/bin/python${PYTHON_VERSION} /usr/bin/python3 \
+ && python --version \
+ && python3 --version \
+# install pip for python${PYTHON_VERSION}
+ && python -m pip install --upgrade --no-cache-dir pip \
+ && pip --version \
+ && pip3 --version \
+# needed for pillow
+ && pip install --upgrade --no-cache-dir setuptools \
+# install essential datascience libraries
+# latest versions compatible with python>=3.7
+ && pip install --no-cache-dir pillow==9.0.1 pandas==1.3.5 numpy==1.21.5 scikit-learn==1.0.2 lifelines==0.26.4 scipy==1.7.3 \
+# install substratools
+ && cd /tmp && pip install --no-cache-dir . \
+# clean the apt cache
+ && apt-get clean \
+ && rm -rf /var/lib/apt/lists/*
+
+# Create default user, group, and home directory
+RUN addgroup --gid ${GROUP_ID} ${GROUP_NAME}
+RUN adduser --disabled-password --gecos "" --uid ${USER_ID} --gid ${GROUP_ID} --home ${HOME_DIR} ${USER_NAME}
+
+ENV PYTHONPATH ${HOME_DIR}
+WORKDIR ${HOME_DIR}
 
 # install datascience workflows libraries
 # latest versions compatible with python>=3.7