first push by sway

SudoDEM2D/cMake/CombineSources.cmake

@@ -0,0 +1,32 @@
+# include several source files (in SRCS) in one or more
+# combined files; each combined file holds maximally 
+# MAXNUM files.
+# BASE gives basename for created files;
+# files corresponding to the pattern are deleted
+# first, so that there are no relicts from previous runs
+# with possibly different MAXNUM
+MACRO(COMBINE_SOURCES BASE SRCS MAXNUM)
+	LIST(LENGTH SRCS SRCS_LENGTH)
+	SET(COMB_COUNTER 0)
+	FILE(GLOB EXISTING "${BASE}.*.cpp")
+	IF("$EXISTING")
+		FILE(REMOVE ${EXISTING})
+	ENDIF()
+	SET(OUT "${BASE}.${COMB_COUNTER}.cpp")
+	FILE(WRITE ${OUT})
+	SET(COUNTER 0)
+	FOREACH(SRC ${SRCS})
+		if(${SRC} MATCHES "^/.*$") # absolute filename
+			FILE(APPEND ${OUT} "#include<${SRC}>\n")
+		else()
+			FILE(APPEND ${OUT} "#include<${CMAKE_SOURCE_DIR}/${SRC}>\n")
+		endif()
+		MATH(EXPR COUNTER "${COUNTER}+1")
+		IF(${COUNTER} EQUAL ${MAXNUM})
+			SET(COUNTER 0)
+			MATH(EXPR COMB_COUNTER ${COMB_COUNTER}+1)
+			SET(OUT "${BASE}.${COMB_COUNTER}.cpp")
+			FILE(WRITE ${OUT})
+		ENDIF()
+	ENDFOREACH()
+ENDMACRO()

SudoDEM2D/cMake/FindCholmod.cmake

@@ -0,0 +1,31 @@
+# - Try to find CHOLMOD
+# This will define
+#
+#  CHOLMOD_FOUND          - system has CHOLMOD
+#  CHOLMOD_LIBRARIES 	    - library to link against to use Cholmod 
+#  CHOLMOD_INCLUDE_DIR    - where to find cholmod.h, etc.
+#  AMD_LIBRARY	 	        - needed by CHOLMOD
+#  COLAMD_LIBRARY 	      - needed by CHOLMOD
+#  CCOLAMD_LIBRARY 	      - needed by CHOLMOD
+#  CAMD_LIBRARY 	        - needed by CHOLMOD
+
+FIND_LIBRARY(CHOLMOD_LIBRARIES NAMES cholmod libcholmod
+        PATHS
+        /usr/lib
+        /usr/local/lib
+        /usr/lib/CGAL
+        /usr/lib64
+        /usr/local/lib64
+        /usr/lib64/CGAL
+    )
+
+FIND_LIBRARY(AMD_LIBRARY NAMES amd PATHS /usr/lib /usr/local/lib /usr/lib/CGAL /usr/lib64 /usr/local/lib64 /usr/lib64/CGAL)
+FIND_LIBRARY(CAMD_LIBRARY NAMES camd PATHS /usr/lib /usr/local/lib /usr/lib/CGAL /usr/lib64 /usr/local/lib64 /usr/lib64/CGAL)
+FIND_LIBRARY(COLAMD_LIBRARY NAMES colamd PATHS /usr/lib /usr/local/lib /usr/lib/CGAL /usr/lib64 /usr/local/lib64 /usr/lib64/CGAL)
+FIND_LIBRARY(CCOLAMD_LIBRARY NAMES ccolamd PATHS /usr/lib /usr/local/lib /usr/lib/CGAL /usr/lib64 /usr/local/lib64 /usr/lib64/CGAL)
+
+FIND_PATH(CHOLMOD_INCLUDE_DIR cholmod.h PATH /usr/include /usr/include/suitesparse)
+
+INCLUDE(FindPackageHandleStandardArgs)
+FIND_PACKAGE_HANDLE_STANDARD_ARGS(Cholmod DEFAULT_MSG CHOLMOD_LIBRARIES CHOLMOD_INCLUDE_DIR AMD_LIBRARY CAMD_LIBRARY COLAMD_LIBRARY CCOLAMD_LIBRARY)
+MARK_AS_ADVANCED(CHOLMOD_LIBRARIES CHOLMOD_INCLUDE_DIR AMD_LIBRARY CAMD_LIBRARY COLAMD_LIBRARY CCOLAMD_LIBRARY)

SudoDEM2D/cMake/FindMetis.cmake

@@ -0,0 +1,16 @@
+# - Find Metis library
+# 
+# This module defines
+#  METIS_INCLUDE_DIR, where to find loki/Typelist.h, etc.
+#  METIS_LIBRARY, libraries to link against to use GL2PS.
+#  METIS_FOUND, If false, do not try to use GL2PS.
+
+FIND_PATH(METIS_INCLUDE_DIR metis.h PATHS /usr/include/metis)
+FIND_LIBRARY(METIS_LIBRARY NAMES metis parmetis PATHS /usr/lib)
+
+# handle the QUIETLY and REQUIRED arguments and set LOKI_FOUND to TRUE if
+# all listed variables are TRUE
+INCLUDE(FindPackageHandleStandardArgs)
+FIND_PACKAGE_HANDLE_STANDARD_ARGS(Metis  DEFAULT_MSG  METIS_INCLUDE_DIR METIS_LIBRARY)
+
+MARK_AS_ADVANCED(METIS_INCLUDE_DIR METIS_LIBRARY)

SudoDEM2D/cMake/FindNumPy.cmake

@@ -0,0 +1,93 @@
+# https://github.com/ContinuumIO/dynd-python/blob/master/FindNumPy.cmake
+
+# - Find the NumPy libraries
+# This module finds if NumPy is installed, and sets the following variables
+# indicating where it is.
+#
+# TODO: Update to provide the libraries and paths for linking npymath lib.
+#
+#  NUMPY_FOUND               - was NumPy found
+#  NUMPY_VERSION             - the version of NumPy found as a string
+#  NUMPY_VERSION_MAJOR       - the major version number of NumPy
+#  NUMPY_VERSION_MINOR       - the minor version number of NumPy
+#  NUMPY_VERSION_PATCH       - the patch version number of NumPy
+#  NUMPY_VERSION_DECIMAL     - e.g. version 1.6.1 is 10601
+#  NUMPY_INCLUDE_DIRS        - path to the NumPy include files
+
+#============================================================================
+# Copyright 2012 Continuum Analytics, Inc.
+#
+# MIT License
+#
+# Permission is hereby granted, free of charge, to any person obtaining
+# a copy of this software and associated documentation files
+# (the "Software"), to deal in the Software without restriction, including
+# without limitation the rights to use, copy, modify, merge, publish,
+# distribute, sublicense, and/or sell copies of the Software, and to permit
+# persons to whom the Software is furnished to do so, subject to
+# the following conditions:
+#
+# The above copyright notice and this permission notice shall be included
+# in all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+# OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR
+# OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+# ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+# OTHER DEALINGS IN THE SOFTWARE.
+#
+#============================================================================
+
+# Finding NumPy involves calling the Python interpreter
+if(NumPy_FIND_REQUIRED)
+    find_package(PythonInterp REQUIRED)
+else()
+    find_package(PythonInterp)
+endif()
+
+if(NOT PYTHONINTERP_FOUND)
+    set(NUMPY_FOUND FALSE)
+    return()
+endif()
+set(DPDIR "${CMAKE_CURRENT_SOURCE_DIR}/../dem2dinstall/SudoDEM/lib/3rdlibs/py/")
+execute_process(COMMAND "${PYTHON_EXECUTABLE}" "-c"
+    "import sys;sys.path.insert(0,'${DPDIR}');import numpy as n; print(n.__version__); print(n.get_include());"
+    RESULT_VARIABLE _NUMPY_SEARCH_SUCCESS
+    OUTPUT_VARIABLE _NUMPY_VALUES
+    ERROR_VARIABLE _NUMPY_ERROR_VALUE
+    OUTPUT_STRIP_TRAILING_WHITESPACE)
+
+if(NOT _NUMPY_SEARCH_SUCCESS MATCHES 0)
+    if(NumPy_FIND_REQUIRED)
+        message(FATAL_ERROR
+            "NumPy import failure:\n${_NUMPY_ERROR_VALUE}")
+    endif()
+    set(NUMPY_FOUND FALSE)
+    return()
+endif()
+
+# Convert the process output into a list
+string(REGEX REPLACE ";" "\\\\;" _NUMPY_VALUES ${_NUMPY_VALUES})
+string(REGEX REPLACE "\n" ";" _NUMPY_VALUES ${_NUMPY_VALUES})
+list(GET _NUMPY_VALUES 0 NUMPY_VERSION)
+list(GET _NUMPY_VALUES 1 NUMPY_INCLUDE_DIRS)
+
+# Make sure all directory separators are '/'
+string(REGEX REPLACE "\\\\" "/" NUMPY_INCLUDE_DIRS ${NUMPY_INCLUDE_DIRS})
+
+# Get the major and minor version numbers
+string(REGEX REPLACE "\\." ";" _NUMPY_VERSION_LIST ${NUMPY_VERSION})
+list(GET _NUMPY_VERSION_LIST 0 NUMPY_VERSION_MAJOR)
+list(GET _NUMPY_VERSION_LIST 1 NUMPY_VERSION_MINOR)
+list(GET _NUMPY_VERSION_LIST 2 NUMPY_VERSION_PATCH)
+string(REGEX MATCH "[0-9]*" NUMPY_VERSION_PATCH ${NUMPY_VERSION_PATCH})
+math(EXPR NUMPY_VERSION_DECIMAL
+    "(${NUMPY_VERSION_MAJOR} * 10000) + (${NUMPY_VERSION_MINOR} * 100) + ${NUMPY_VERSION_PATCH}")
+
+find_package_message(NUMPY
+    "Found NumPy: version \"${NUMPY_VERSION}\" ${NUMPY_INCLUDE_DIRS}"
+    "${NUMPY_INCLUDE_DIRS}${NUMPY_VERSION}")
+
+set(NUMPY_FOUND TRUE)

SudoDEM2D/cMake/FindPythonModule.cmake

@@ -0,0 +1,23 @@
+# http://www.cmake.org/pipermail/cmake/2011-January/041666.html
+#
+# - Find Python Module
+
+FUNCTION(find_python_module module)
+  STRING(TOUPPER ${module} module_upper)
+
+  IF(ARGC GREATER 1 AND ARGV1 STREQUAL "REQUIRED")
+    SET(${module}_FIND_REQUIRED TRUE)
+  ENDIF(ARGC GREATER 1 AND ARGV1 STREQUAL "REQUIRED")
+
+  EXECUTE_PROCESS(COMMAND "${PYTHON_EXECUTABLE}" "-c" 
+    "import re, ${module}; print re.compile('/__init__.py.*').sub('',${module}.__file__)"
+    RESULT_VARIABLE _${module}_status 
+    OUTPUT_VARIABLE _${module}_location
+    ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
+
+    IF(_${module}_status MATCHES 0)
+      SET(PY_${module} ${_${module}_location} CACHE STRING "Location of Python module ${module}")
+    ENDIF(_${module}_status MATCHES 0)
+
+  FIND_PACKAGE_HANDLE_STANDARD_ARGS(${module} DEFAULT_MSG PY_${module})
+ENDFUNCTION(find_python_module)