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Hi Niels, I think these lines can be simply removed as the directories are properly included at the new location of the KNN files.
Can you create a PR?
https://github.com/SuperElastix/elastix/blob/develop/CMakeLists.txt#L208 says:
These two paths are no longer there. Can they simply be removed from elxCommon_INCLUDE_DIRECTORIES?
The issue was found by CppCheck http://cppcheck.sourceforge.net which says, "Couldn't find path given by -I '...\Elastix\Common\KNN'.
By the way, KNN is currently located at elastix/Components/Metrics/KNNGraphAlphaMutualInformation
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