Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
SwatiKaushik committed Jan 11, 2015
1 parent f7ed5a8 commit b63d8f9
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ Computational Requirements
C-HMM can be run on linux/mac OS. C-HMM memory requirement depends on the size of sequence database. We recommend to use high memory machines/clusters. It is a multithreaded program implemented in Java. Multithreading options (# of threads, # of cpu per thread, maximum # of threads) can be declared in cascade.properties/cascade.properties-cust files.


Results analysis
Results Analysis
==========================

After completion of a sequence searches, C-HMM provides separate directories for each generation. Each generation directory would contain 3 results files:
Expand All @@ -70,7 +70,7 @@ After completion of a sequence searches, C-HMM provides separate directories for
If user has opted for clustering of hits, each generation directory would also have gen_#_result_nr.out.clstr file. This file has information about clustering of hits.


Cascade Property file
Cascade Property File
===============================
C-HMM provides many user defined options which can be declared in property file. All the options provided in the property files are explained below:

Expand Down

0 comments on commit b63d8f9

Please sign in to comment.