updated vignette

SwissTPH · Feb 8, 2024 · 208552b · 208552b
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diff --git a/docs/articles/vivaxmodelr_delay.html b/docs/articles/vivaxmodelr_delay.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -5,7 +5,7 @@ articles:
   vivaxmodelr: vivaxmodelr.html
   vivaxmodelr_delay: vivaxmodelr_delay.html
   vivaxmodelr_dev_doc: vivaxmodelr_dev_doc.html
-last_built: 2023-11-10T21:21Z
+last_built: 2024-02-08T08:33Z
 urls:
   reference: https://swisstph.github.io/VivaxModelR/reference
   article: https://swisstph.github.io/VivaxModelR/articles

diff --git a/vignettes/vivaxmodelr_delay.Rmd b/vignettes/vivaxmodelr_delay.Rmd
@@ -4,6 +4,7 @@ subtitle: "An R package to simulate *P. vivax* dynamics, model with delayed acce
 author: "Clara Champagne, Maximilian Gerhards, Justin Lana, Arnaud Le Menach, Emilie Pothin"
 output: rmarkdown::html_vignette
 bibliography: bibliography.json
+citation_package: natbib
 vignette: >
   %\VignetteIndexEntry{VivaxModelRDelays}
   %\VignetteEngine{knitr::rmarkdown}
@@ -14,7 +15,7 @@ This package contains functions to simulate a compartmental model for Plasmodium
 The model includes case management and vector control and is presented in @champagne2024.
 
 
-It is an extension of @white2016 and @champagne2022, and can be represented by the following diagram:
+It is an extension of @white2016 and can be represented by the following diagram:
 ```{r pressure, echo=FALSE, fig.cap="Schematic representation of the model", out.width = '80%'}
 knitr::include_graphics("models_delay_cartoon.png")
 ```
@@ -160,7 +161,7 @@ ggplot(simulation_model2)+
 
 ## Additional interventions
 
-In order to use the model without delays in treatment (as in @champagne2022, see vignette for the "simple version"), the option delay=F can be used (default) and the parameter $\sigma$ does not need to be specified. 
+In order to use the model without delays in treatment (see vignette for the "simple version"), the option delay=F can be used (default) and the parameter $\sigma$ does not need to be specified. 
 
 Additional interventions, namely Mass Drug Administration and Reactive Case Detection, can be included in the model.