Draft instructions #4
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| name: Execute template to populate repository | |
| on: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| setup-repo: | |
| if: ${{ github.repository != 'Sydney-Informatics-Hub/template-nf' }} | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.head_ref }} | |
| - name: Install cookiecutter | |
| run: pip3 install cookiecutter | |
| - uses: actions/github-script@v4 | |
| id: fetch-repo-and-user-details | |
| with: | |
| script: | | |
| const query = `query($owner:String!, $name:String!) { | |
| repository(owner:$owner, name:$name) { | |
| name | |
| description | |
| owner { | |
| login | |
| ... on User { | |
| name | |
| } | |
| ... on Organization { | |
| name | |
| } | |
| } | |
| } | |
| }`; | |
| const variables = { | |
| owner: context.repo.owner, | |
| name: context.repo.repo | |
| } | |
| const result = await github.graphql(query, variables) | |
| return result | |
| - name: Build out template | |
| env: | |
| INFO: ${{ steps.fetch-repo-and-user-details.outputs.result }} | |
| run: | | |
| export REPO_NAME=$(echo $INFO | jq -r '.repository.name') | |
| # Run cookiecutter | |
| pushd /tmp | |
| cookiecutter gh:Sydney-Informatics-Hub/Nextflow_DSL2_template --no-input \ | |
| app_name=$REPO_NAME \ | |
| description="$(echo $INFO | jq -r .repository.description)" \ | |
| github_username="$(echo $INFO | jq -r .repository.owner.login)" \ | |
| author_name="$(echo $INFO | jq -r .repository.owner.name)" | |
| popd | |
| # Delete the .github directory and README, they're not needed anymore | |
| rm -rf .github/ | |
| rm -rf README.md | |
| shopt -s dotglob | |
| # Move template content to root, ensure hidden and README are replaced | |
| rsync -a /tmp/$REPO_NAME/ . | |
| - name: Force push changes to main | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: "Build skeleton template" | |
| push_options: "--force" |