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New feature sensitivityTuning #285

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Yu-sysbio opened this issue Mar 18, 2023 · 1 comment
Closed

New feature sensitivityTuning #285

Yu-sysbio opened this issue Mar 18, 2023 · 1 comment
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enhancement fixed in develop Has already been addressed in develop branch

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@Yu-sysbio
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By running [ecModel, tunedKcats] = sensitivityTuning(ecModel) on my model, I got the error below:

Iteration 1: Growth:
The logical indices contain a true value outside of the array bounds.

Error in sensitivityTuning (line 75)
drawFluxes(drawRxns) = res.x(drawRxns);

I am wondering if we could list potential reasons and solutions for the user.
@edkerk
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edkerk commented Mar 18, 2023 •
edited

Can you post *.mat with the ecModel and model adapter, to replicate what it encounters?
This probably occurs if the input model cannot be solved. This is addressed in 5452e31.

edkerk added a commit that referenced this issue Mar 18, 2023
@edkerk
fix: sensitivityTuning check if model can solve
5452e31 
solves #285
@edkerk edkerk added the fixed in develop Has already been addressed in develop branch label Mar 20, 2023
@edkerk edkerk mentioned this issue Mar 20, 2023
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@edkerk edkerk closed this as completed Mar 21, 2023
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@edkerk @Yu-sysbio