Refactor/constrain enzymes #63
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simplified changeMedia_batch to only open the carbon source exchange rxn
added c_source as input to constrainEnzymes & flexibilizeProteins for making functions more generic
+ updated readme (changeMedia_batch.m is now optional to modify)
only model change is opening exchange of bicarbonate, which has no effect in the final simulations
Codecov Report
@@ Coverage Diff @@
## devel #63 +/- ##
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Coverage 97.83% 97.83%
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Files 2 2
Lines 185 185
Branches 23 23
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Hits 181 181
Misses 3 3
Partials 1 1Continue to review full report at Codecov.
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IVANDOMENZAIN
approved these changes
Dec 11, 2018
Merged
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changeMedia_batchto only open the carbon source exchange rxn. The old function was moved to utilities (changeMedia_yeast)c_sourceas input toconstrainEnzymes&flexibilizeProteinsfor making functions more generic