Suspected duplicated metabolites from EHMN

[JHL-452b]

Current behavior:

Suspected duplicated metabolites from EHMN:

reference ID	met ID	affected rxns	Action for mets	Action for rxns	Comments
CE5122	MAM02747c MAM03362c MAM02747x MAM03362x	No	replace MAM03362c to MAM02747c; replace MAM03362x to MAM02747x	No	chiral metabolites, keep it for now
CE4824	MAM00134r MAM03353r	No	replace MAM03353r to MAM00134r	No	chiral metabolites, keep it for now
CE4837	MAM00131c MAM03354c MAM00131r MAM03354r	(MAR02401 MAR03441)	remove MAM03354c; replace MAM03354r to MAM00131r	remove MAR03441	Yes, and also combine all cross reference annotations for mets and rxns
CE7090	MAM00028c MAM00029c	(MAR02586 MAR02588)	replace MAM00029c to MAM00028c	remove MAR02588	yes
CE2516	MAM01696c MAM03332c MAM01696e MAM03332e	(MAR00407 MAR10164) (MAR00576 MAR10433)	remove MAM03332c and MAM03332e	remove MAR10164 and MAR10433	yes
CE5123	MAM00655x MAM03363x	(MAR03484 MAR03384) (MAR03486 MAR03385)	remove MAM03363x	remove MAR03384 and MAR03385	chiral metabolites, keep it for now
CE5169	MAM00748m MAM03368m MAM00748x MAM03368x	No	replace MAM03368m to MAM00748m; replace MAM03368x to MAM00748x	No	Yes
CE5168	MAM00036m MAM03367m MAM00036x MAM03367x	(MAR01644 MAR03754) (MAR01642 MAR03756)	replace MAM03367m to MAM00036m; replace MAM03367x to MAM00036x	remove MAR03754 and MAR03756	Not the same according to SMILES check, keep it for now
CE5160	MAM00893m MAM00893x MAM03364c MAM03364r	No	replace MAM03364c to MAM00893c; replace MAM03364r to MAM00893r	No	Not the same according to SMILES check, keep it for now
CE4820	MAM00853x MAM00902c MAM00853r	No	replace MAM00902c to MAM00853c	No	Yes
CE2084	MAM01123c MAM01126c MAM01123m MAM01123x MAM01126m MAM01126x		change EHMN ID annotation for MAM01123c, MAM01123m and MAM01123x to CE7097		No duplicates

• remove mets MAM03354c, MAM03332c, MAM03332e
• remove rxns MAR03441, MAR02588, MAR10164, MAR10433
• change EHMN ID annotations for MAM01123c, MAM01123m, MAM01123x
• replace mets

old ID	new ID
MAM03354r	MAM00131r
MAM00029c	MAM00028c
MAM03368m	MAM00748m
MAM03368x	MAM00748x
MAM00902c	MAM00853c

[feiranl]

Please go ahead and make the corresponding changes.

[haowang-bioinfo]

fixed in #649