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Beta-Oxidation Reactions for 13,16,19-docosatrienoyl-CoA and (11Z,14Z,17Z)-eicosatrienoyl-CoA #779

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Devlin-Moyer opened this issue Dec 23, 2023 · 0 comments
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Devlin-Moyer commented Dec 23, 2023

MAR03432 fully β-oxidizes 13,16,19-docosatrienoyl-CoA to acetyl-CoA in a single step, and MAR03431 fully β-oxidizes (11Z,14Z,17Z)-eicosatrienoyl-CoA to acetyl-CoA in a single step. One round of β-oxidation of 13,16,19-docosatrienoyl-CoA would produce (11Z,14Z,17Z)-eicosatrienoyl-CoA, and another would produce linolenoyl-CoA (AKA (9Z,12Z,15Z)-octadecatrienoyl-CoA, MAM02390m). Since the β-oxidation of linolenoyl-CoA is already represented by the long series of reactions outlined in #765, MAR03431 and MAR03432 are partially redundant with those reactions. I think a relatively straightforward remedy to this situation would be to edit each of them to only represent a single round of β-oxidation each:

  • Edit MAR03432 to be 13,16,19-docosatrienoyl-CoA + FAD + H2O + NAD+ + CoA -> (11Z,14Z,17Z)-eicosatrienoyl-CoA + FADH2 + NADH + H+ + acetyl-CoA, GPR: (ACAD9 or ACADL or ACADVL) and HADHA and HADHB
  • Edit MAR03431 to be (11Z,14Z,17Z)-eicosatrienoyl-CoA + FAD + H2O + NAD+ + CoA -> linolenoyl-CoA + FADH2 + NADH + H+ + acetyl-CoA, GPR: (ACAD9 or ACADL or ACADVL) and HADHA and HADHB
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