pcLactis

Introduction

This repository contains files for proteome-constrained model of Lactococcus lactis.

Eunice van Pelt-Kleinjan (@EunicevPK), Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
Yu Chen (@Yu-sysbio), Chalmers University of Technology, Gothenburg, Sweden

Name		Name	Last commit message	Last commit date
Latest commit History 89 Commits
Data		Data
Figures		Figures
Functions		Functions
ParamSensResults		ParamSensResults
Results		Results
Simulations		Simulations
kcat_GECKO		kcat_GECKO
pcLactisCluster		pcLactisCluster
.DS_Store		.DS_Store
.Rhistory		.Rhistory
Build_pcLactis.m		Build_pcLactis.m
Determine_blocked_enzymes.m		Determine_blocked_enzymes.m
Estimate_ATP_M_Model.m		Estimate_ATP_M_Model.m
Estimate_glucose_transporter.m		Estimate_glucose_transporter.m
GEM_lactis_MG1363.xml		GEM_lactis_MG1363.xml
Gene_list.mat		Gene_list.mat
LICENSE		LICENSE
M_Model.mat		M_Model.mat
M_model.xlsx		M_model.xlsx
README.md		README.md
Reduced_cost_for_AA.m		Reduced_cost_for_AA.m
Remove_blocked_enzymes_from_ParamSens.m		Remove_blocked_enzymes_from_ParamSens.m
Sensitive_analysis_glucose_transporter.m		Sensitive_analysis_glucose_transporter.m
Sensitive_analysis_modeled_proteome.m		Sensitive_analysis_modeled_proteome.m
Simulate_glucose_limited_chemostats.m		Simulate_glucose_limited_chemostats.m
Simulate_glucose_limited_chemostats_5358.m		Simulate_glucose_limited_chemostats_5358.m
Simulation.lp		Simulation.lp
Simulation.lp.out		Simulation.lp.out
Small_model_fig3d.m		Small_model_fig3d.m
Small_model_sensitivity.m		Small_model_sensitivity.m
Small_model_ser.m		Small_model_ser.m
Startme.m		Startme.m
kcat_M.mat		kcat_M.mat
kcat_M.xls		kcat_M.xls
pcLactis_Model.mat		pcLactis_Model.mat
pcLactis_Model.xls		pcLactis_Model.xls