index.rst

Welcome to VirAmp's documentation!

VirAmp is a galaxy-based system for fast virus genome assembly and variation discovery.

Quick Start Guide:

1. Launch the latest version of the "Szpara_Viramp" AMI from Amazon Web Services

2) SSH into the server and start the run.sh script using screen ./run.sh

Contents:

.. toctree::
        :maxdepth: 2

        introduction
        viramp_intro
        variation_assess
        ec2_import

• For further information on the individual tools VirAmp utilizes please see the following websites:

  • seqtk
  • diginorm
  • velvet
  • AMOS
  • Quast
  • MUMmer
  • Circos