ld-block-removal

Data format

• Input qtls.csv file must be specified in the nextflow.config file and have the columns RSID, CHR and POS for each SNP you would like to examine
• RSID_label must match the format used in the BGEN files for the cohort-of-interest
• RSID is the RSID associated with the SNP you are assessing. This is for file-naming purposes if your BGEN files do not use rsIDs.
• CHR must be just an integer values, without the prefix chr
• POS must also be an integer value and must match the corresponding BGEN files and genome assembly chosen