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Add section about custom annotations
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iimog committed Apr 18, 2017
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Expand Up @@ -774,6 +774,26 @@ mapping. For a quick start you find the three files ``ec_info.tab``,
tbro-tools addPathwayInformationToDB kegg_info.tab
tbro-tools addEC2PathwayMapping ec_kegg_map.tab

Custom Annotations
~~~~~~~~~~~~~~~~~~

Arbitrary key/value pairs can be added to isoforms and unigenes since TBro version 1.1.1
All you need is a tsv file with two columns (unigene/isoform identifier and value).
The key is given as a command-line parameter for the whole file.
Consider the file ``custom.tsv``:

::

<Identifier><TAB><Value>

Importing this file into TBro with key ``my_custom_annotation`` you have to execute:

::

tpro-import annotation_custom --annotation-type my_custom_annotation custom.tsv

It is then possible to search via annotation search for custom annotations with key ``my_custom_annotation``.

Any other transcriptome
-----------------------

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