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Update config for BLAST setup
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iimog committed Sep 28, 2016
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Expand Up @@ -666,11 +666,23 @@ appropriate sections like this:
| You have to specify a location that can be reached by your worker
machine. If you just want to have a single worker on the same machine as
the server you can specify the location in the local file system
starting with ``file://``. To perform the changes run the
``queue_config.sql`` commands in your queue database.
starting with ``file://``. If you used the docker setup you can load the
files into the docker ftp container with curl (replace $WORKERFTP_FTP_USER,
$WORKERFTP_FTP_PW and $WORKERFTP_IP with the respective values of your
docker container):

::

curl --data-binary --ftp-pasv --user "$WORKERFTP_FTP_USER":"$WORKERFTP_FTP_PW" -T cannabis_sativa_transcriptome.zip ftp://$WORKERFTP_IP/
curl --data-binary --ftp-pasv --user "$WORKERFTP_FTP_USER":"$WORKERFTP_FTP_PW" -T cannabis_sativa_predpep.zip ftp://$WORKERFTP_IP/


To perform the changes run the ``queue_config.sql`` commands in your queue database.

| Now TBro knows about the database and shows it in the web interface.
To perform ``BLAST`` searches we need a worker to execute them. So
create one with this command:
To perform ``BLAST`` searches we need a worker to execute them. In case
of the docker setup you already have a blast worker running. Otherwise
you can create one with this command:

::

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