update README

TRON-Bioinformatics · Nov 2, 2022 · 099c6d7 · 099c6d7
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diff --git a/README.md b/README.md
@@ -45,6 +45,8 @@ Optional input:
     * read_length: the read length (default: 50)
     * hlahd_folder: the HLA-HD folder (default: /code/hlahd.1.2.0.1)
     * bowtie2_folder: the bowtie2 folder (default: /code/bowtie/2.3.4.3)
+    * bowtie2_module: the module to load with bowtie2
+    * ld_library_path: the value to set in LD_LIBRARY_PATH
     * cpus: the number of CPUs per sample (default: 15)
     * memory: the amount of memory per sample (default: 30g)
 

diff --git a/nextflow.config b/nextflow.config
@@ -57,6 +57,8 @@ Optional input:
     * read_length: the read length (default: 50)
     * hlahd_folder: the HLA-HD folder (default: /code/hlahd.1.2.0.1)
     * bowtie2_folder: the bowtie2 folder (default: /code/bowtie/2.3.4.3)
+    * bowtie2_module: the module to load with bowtie2
+    * ld_library_path: the value to set in LD_LIBRARY_PATH
     * cpus: the number of CPUs per sample (default: 15)
     * memory: the amount of memory per sample (default: 30g)
     """