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Rebuilt site (clean update of workshops page)
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@laduplessis
laduplessis committed Jul 18, 2023
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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-2016/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-2018/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-2020/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-Down-Under/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-Online/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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8 changes: 4 additions & 4 deletions workshops/Taming-the-BEAST-SBT/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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<p>Please ensure the following software is installed prior to the start of the workshop.</p>

<ul>
<li><strong>Java 8 or higher:</strong> This is required by BEAST 2 <a href="https://adoptium.net/en-GB/">(download)</a>.</li>
<li><strong>BEAST 2:</strong> BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. We will be using this software to perform analyses on the data brought to the workshop. We will be using <strong>BEAST v2.7</strong> for the workshop <a href="http://beast2.org/">(download)</a>.</li>
<li><strong>FigTree:</strong> FigTree is a graphical viewer of phylogenetic trees, specifically designed to display summarised and annotated trees produced by BEAST <a href="http://beast.community/figtree">(download)</a>.</li>
<li><strong>Tracer:</strong> Tracer is a program for analysing the trace files generated by Bayesian MCMC runs. It can be used to check mixing, ESS, parameter correlations, etc. <a href="http://beast.community/tracer">(download)</a>.</li>
<li><strong>BEAGLE (optional):</strong> BEAGLE is a high-performance library that can perform the core calculations in BEAST2 (and many other phylogenetics packages) much faster. BEAGLE isn’t necessary for the workshop, but it will speed up your analyses <a href="http://beast.community/beagle">(download)</a>.</li>
<li><strong>Java 8 or higher:</strong> You may need to install a Java JDK to run FigTree and Tracer <a href="https://adoptium.net/en-GB/">(download)</a>.</li>
<li><strong>BEAGLE (optional):</strong> <a href="http://beast.community/beagle">BEAGLE</a> is a high-performance library that can perform the core calculations in BEAST2 (and many other phylogenetics packages) much faster. BEAGLE isn’t necessary for the workshop, but it will speed up your analyses <a href="https://github.com/beagle-dev/beagle-lib">(download)</a>.</li>
<li><strong>R:</strong> R is a free software environment that provides a wide variety of statistical (linear and nonlinear modelling, classical statistical tests, time-series analysis, classification, clustering) and graphical techniques, and is highly extensible <a href="https://www.r-project.org/">(download)</a>.</li>
<li><strong>RStudio (optional):</strong> RStudio provides a friendly front-end for R <a href="https://posit.co/download/rstudio-desktop/">(download)</a>.</li>
</ul>
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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-Squamish/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-in-London/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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4 changes: 2 additions & 2 deletions workshops/Taming-the-BEAST-in-the-South-Pacific/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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12 changes: 10 additions & 2 deletions workshops/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<!-- RSS feed -->
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="https://taming-the-beast.org//feed.tutorials.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.news.xml">
<link rel="alternate" type="application/rss+xml" title="Taming the BEAST" href="http://localhost:4000/feed.tutorials.xml">


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</li>


<div class="smallspacer"></div>
<li><i class="bi bi-calendar-week"></i>
<a class="off" href="/workshops/Taming-the-BEAST-SBT/">Programme</a></li>


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<li><i class="bi bi-file-text"></i>
<a class="off" href="https://github.com/Taming-the-BEAST/Squamish-BEAST-Tamers-2023-Lectures">Lecture slides</a></li>


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