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GRN inference error when getting nodes. #29
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This could be fixed using However, using a bigger dataset the following error then pops up:
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Hi,
Glad you got this working - the delimiter defaults to tab. For the error with the bigger dataset: how big is the dataset, and does the error still occur without |
It is fairly large though not huge, ~16K cells and as many genes. |
Hi, just checking in whether you have any ideas on whether you have an idea on how this problem may be solved. Thanks, |
Implicit broadcasting was deprecated in 7.0. Closes #29
@koenvandenberge Apologies for the delay, and thanks for reporting. The error was happening because of a deprecation in Julia 7.0. After fixing, calling The size wasn't a problem; the error was only happening if there were genes in the dataset that had all identical values. |
Implicit broadcasting was deprecated in 7.0. Closes #29
Hi,
I'm trying to estimate a GRN on a dataset matrix that can be found here.
However, I get an error in the first step, also when I use uniform widths as discretizer. Any ideas on how to fix this?
Note that reading the dataset using CSV works:
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