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How to use EpiRegio to identify enriched TFs of a set of genes of interest
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The application scenario is based on the section *Identify enriched transcription factors of differentially expressed genes* from our paper. To perform the analysis `bedtools <https://bedtools.readthedocs.io/en/latest/content/installation.html>`_ must be installed on your machine. In addition, we provide a GitHub repository (add link) with an example file, the TF binding motifs and the motif enrichment tool `PASTAA <http://trap.molgen.mpg.de/PASTAA/>`_, which we use in Step 4. To clone the repository use::
The application scenario is based on the section *Identify enriched transcription factors of differentially expressed genes* from our paper. To perform the analysis python3 and `bedtools <https://bedtools.readthedocs.io/en/latest/content/installation.html>`_ must be installed on your machine. In addition, we provide a GitHub repository (add link) with an example file, the TF binding motifs and the motif enrichment tool `PASTAA <http://trap.molgen.mpg.de/PASTAA/>`_, which we use in Step 4. To clone the repository use::
