Cross-tissue immune cell analysis

Data pre-processing and analysis scripts for the cross-tissue immune cell atlas (see our preprint). Note that the preprint only contains part of the dataset.

Contents

metadata contains information on library and donor metadata for the three cross-tissue datasets that were integrated in this project.

notebooks contains ipython analysis notebooks.

Data access

Raw fastq files are available at ArrayExpress with accession number E-MTAB-11536.

Processed data can be visualized and downloaded from https://www.tissueimmunecellatlas.org/