Merge pull request #11 from TheJacksonLaboratory/G3-191-add-default-s…

…pecies-identifier-types-for-aon-to-geneweaver-core G3 191: Adding aon species to id type map
TheJacksonLaboratory · Feb 23, 2024 · 6c9e0ff · 6c9e0ff
2 parents 22bce56 + 3b0e8e9
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diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "geneweaver-core"
-version = "0.9.0a4"
+version = "0.9.0a5"
 description = "The core of the Jax-Geneweaver Python library"
 authors = ["Jax Computational Sciences <cssc@jax.org>"]
 readme = "README.md"

diff --git a/src/geneweaver/core/mapping.py b/src/geneweaver/core/mapping.py
@@ -0,0 +1,16 @@
+"""Mapping definitions."""
+
+from geneweaver.core.enum import GeneIdentifier, Species
+
+AON_ID_TYPE_FOR_SPECIES = {
+    Species.MUS_MUSCULUS: GeneIdentifier.MGI,
+    Species.HOMO_SAPIENS: GeneIdentifier.HGNC,
+    Species.RATTUS_NORVEGICUS: GeneIdentifier.RGD,
+    Species.DANIO_RERIO: GeneIdentifier.ZFIN,
+    Species.DROSOPHILA_MELANOGASTER: GeneIdentifier.FLYBASE,
+    Species.MACACA_MULATTA: GeneIdentifier.ENTREZ,
+    Species.CAENORHABDITIS_ELEGANS: GeneIdentifier.WORMBASE,
+    Species.SACCHAROMYCES_CEREVISIAE: GeneIdentifier.SGD,
+    Species.GALLUS_GALLUS: GeneIdentifier.CGNC,
+    Species.CANIS_FAMILIARIS: GeneIdentifier.ENTREZ,
+}