Containers Definition Files

for JAX-GM Microbiome Core

Each app used in our analysis pipelines will have its own folder, containing a Dockerfile and the Docker and converted Singularity images.

Image Build Example

Build a docker image from a Dockerfile, push it to docker hub, then use singularity to pull and convert it into a .sif image file.

    DockerAccount="my_username"
    ImageName="flash_assembler"
    ImageTag="1.2.11"
    docker build -t ${DockerAccount}/${ImageName}:${ImageTag} ${ImageName}/
    # test resulting image's container commands...
    docker push ${DockerAccount}/${ImageName}:${ImageTag}
    singularity pull ${ImageName}/${ImageName}.sif docker://${DockerAccount}/${ImageName}:${ImageTag}