Added and tested centered patch sampler for mask of labeled objects #15
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name: Run Tests on push | |
on: [push, pull_request, workflow_dispatch] | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.9 | |
- name: Install ependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install torch==1.13.1+cpu torchvision==0.14.1+cpu --extra-index-url https://download.pytorch.org/whl/cpu | |
pip install tqdm==4.66.1 | |
pip install tifffile==2023.9.26 | |
pip install . | |
- name: Test with pytest | |
run: | | |
pip install pytest pytest-cov | |
# When using pytest and pytorch at the same time, an error of multiple copied of OpenMP runtime library will rise. | |
# This is a well known issue and is the reason of why pytorch uses unitest for testing and not pytest. | |
# This is a non-recomended, non-supported, and therefore non-elegant solution for that problem, but at least let run the test suite. | |
export KMP_DUPLICATE_LIB_OK=TRUE | |
pytest tests --cov=zarrdataset | |
coverage report -m |