CNS-paper

Provides code for FEM, optic flow and generating kymographs as shown in paper:

Condensation of the Drosophila nerve cord is oscillatory and depends on coordinated mechanical interactions

Katerina Karkali ¹, Prabhat Tiwari ², Anand Singh ^{2, 11}, Sham Tlili ^{2, 12}, Ignasi Jorba ^{3, 4, 5}, Daniel Navajas ^{3, 4, 5}, José J.Muñoz ^{6, 7, 8}, Timothy E.Saunders ^{2, 9, 10}, Enrique Martin-Blanco ^{1, 13}
https://www.sciencedirect.com/science/article/pii/S1534580722001678#ack0010

If you have any questions. test data sets are provided (test sets should be unzipped prior to use).
Data for the codes can be found at https://www.dropbox.com/sh/xz8dcoxmlgz0hum/AAAwIL_FqNL1aERiUJssnfXOa?dl=0.

Contact:

• Sham Tlili krystalysham@gmail.com
• Timothy Saunders timothy.saunders@warwick.ac.uk
• Jose Munoz j.munoz@upc.edu

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1 : Instituto de Biología Molecular de Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona, Spain
2 : Mechanobiology Institute, National University of Singapore, Singapore, Singapore
3 : Institute for Bioengineering of Catalonia, Barcelona, Spain
4 : CIBER de Enfermedades Respiratorias (CIBERES), Madrid, Spain
5 : Facultat de Medicina i Ciencies de la Salut, Universitat de Barcelona, Barcelona, Spain
6 : Laboratori de Càlcul Numèric (LaCàN), Universitat Politècnica de Catalunya, Barcelona, Spain
7 : Centre Internacional de Mètodes Numèrics en Enginyeria (CIMNE), 08034 Barcelona, Spain
8 : Institut de Matemàtiques de la Universitat Politècnica de Catalunya-BarcelonaTech (IMTech), Barcelona, Spain
9 : Institute of Molecular and Cell Biology, A∗STAR, Singapore, Singapore
10 : Warwick Medical School, University of Warwick, Coventry, UK