**** MethylationHMM**** This repository contains the HMM implementation for decoding CpG sites methylation states. This project is based on the [fmorenopino's HeterogeneousHMM] python implementation with minor adjustments that adopts the HMM to read counts based genomic data.
Nurislamov, A.; Lagunov, T.; Gridina, M.; Krasikova, A.; Fishman, V. Single-Cell DNA Methylation Analysis of Chicken Lampbrush Chromosomes. Int. J. Mol. Sci. 2022, 23, 12601. https://doi.org/10.3390/ijms232012601