Update backSwap.py

TobyBaril · Apr 30, 2024 · 77f7215 · 77f7215
1 parent 7718e8f
commit 77f7215
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/scripts/backSwap.py b/scripts/backSwap.py
@@ -11,8 +11,9 @@
 orig = dict(csv.reader(open(dictionary), delimiter="\t"))
 dict = {value:key for key, value in orig.items()}
 
-table = pd.read_csv(input, names = ['scaf', 'start', 'end', 'repeat', 'score', 'strand'], delim_whitespace = True, header = None)
+table = pd.read_csv(input, names = ['scaf', 'start', 'end', 'repeat', 'score', 'strand'], sep='\s+', header = None)
 table['scaf'] = table['scaf'].astype(str)
-table['scaf'].replace(dict, inplace = True)
+# table['scaf'].replace(dict, inplace = True)
+table['scaf'] = table['scaf'].replace(dict)
 
 table.to_csv(output, index = False, header = False, sep = '\t')