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Earl Grey is now in bioconda!
This update has some small fixes for optional stages:
clustering had an issue with finding the correct file, this has been fixed
a new way to determine the latest output of TEstrainer has been implemented so that the latest file is always found in the event of a failure, without the user having to manage files.
fixes in TEstrainer_for_earlGrey.sh, where there were relative file paths rather than full paths
README has been updated with changes enabling compatibility with Mac in addition to linux systems