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Earl Grey v4.0
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@TobyBaril TobyBaril released this 22 Nov 15:32
· 107 commits to main since this release
v4.0
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Learn about vigilant mode.

New features incoming!

Thank you for using Earl Grey and for giving me suggestions on how I can make this tool better for your research purposes. It means a lot that you are choosing to use my tool, which has been my baby for a long time now! I have implemented some popular requests, and you can find information on these below.

  • Added the option to generate a soft-masked version of the input genome after annotation defragmentation with -d yes.
  • Removed the default behaviour of removing TEs <100bp in length. This is now an option implemented with -m yes.

Keep your eyes open for the new preprint that should hopefully appear soon!

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