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Add NUTS C++ example and update CMake #29

Merged
merged 1 commit into from
Jun 4, 2022
Merged

Add NUTS C++ example and update CMake #29

merged 1 commit into from
Jun 4, 2022

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papachristoumarios
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I added a simple NUTS C++ example.

@papachristoumarios papachristoumarios mentioned this pull request Apr 5, 2022
Merged
@TolisChal TolisChal merged commit 0f1bb2f into TolisChal:nuts_hmc Jun 4, 2022
TolisChal added a commit that referenced this pull request Oct 17, 2023
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
074a562 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis <apostolos.chalkis@quantagonia.com>
TolisChal added a commit that referenced this pull request Jul 7, 2024
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
9d410e7 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis <apostolos.chalkis@quantagonia.com>
TolisChal added a commit that referenced this pull request Jul 7, 2024
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
c3abd49 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis (TolisChal) <tolis.chal@gmail.com>
TolisChal added a commit that referenced this pull request Jul 8, 2024
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
8454a64 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis (TolisChal) <tolis.chal@gmail.com>
TolisChal added a commit that referenced this pull request Jul 8, 2024
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
42749ef 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis (TolisChal) <tolis.chal@gmail.com>
TolisChal added a commit that referenced this pull request Jul 8, 2024
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
4a00cad 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis (TolisChal) <tolis.chal@gmail.com>
TolisChal added a commit that referenced this pull request Jul 17, 2024
@TolisChal @papachristoumarios
No-U-Turn Sampler in HMC (GeomScale#216)
9539796 
* initialize nuts sampler class

* implement the burnin of nuts sampler

* add tests and resolve bugs

* implement e0 estimation in burnin of nuts

* optimize leapfrog

* integrate nuts into the R interface

* document random walk in sample_points.cpp in R interface

* fix burnin for the non-truncated case

* resolve bugs in hmc and nuts pipelines

* improve the preprocess in burin step of nuts

* split large lines in sample_points.cpp

* Add NUTS C++ example and update CMake (#29)

* resolve PR comments

* fix minor bug

* fix compiler bug

* fix error in building the C++ examples

* resolve warnings in sample_points

* fix lpsolve cran warning

* fix cran warning on mac

* improve lpsolve cmake for cran check

* fix R warning in mac test

* remove lpsolve header

* resolve PR comments

---------

Co-authored-by: Marios Papachristou <papachristoumarios@gmail.com>
Co-authored-by: Apostolos Chalkis (TolisChal) <tolis.chal@gmail.com>
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2 participants
@papachristoumarios @TolisChal