GitHub - TonyKess/Gander_charr: scripts used in genotyping and analysis of Gander Lake Arctic Charr morphs

TonyKess / Gander_charr Public

scripts used in genotyping and analysis of Gander Lake Arctic Charr morphs

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Name		Name	Last commit message	Last commit date
Latest commit History 38 Commits
charr_CNV_rep_compare.R		charr_CNV_rep_compare.R
charr_RDA_VST.R		charr_RDA_VST.R
charr_align		charr_align
charr_angsd2beagle		charr_angsd2beagle
charr_angsd2beagle_repfiltered		charr_angsd2beagle_repfiltered
charr_axiom_RDA.R		charr_axiom_RDA.R
charr_axiom_import.R		charr_axiom_import.R
charr_axiom_popstructure_OLtests.R		charr_axiom_popstructure_OLtests.R
charr_cnvnator		charr_cnvnator
charr_cutadapt.sh		charr_cutadapt.sh
charr_deduplicate		charr_deduplicate
charr_demog_plot.R		charr_demog_plot.R
charr_dosaf		charr_dosaf
charr_get_XPs_forGO		charr_get_XPs_forGO
charr_humanKEGG_polysel.R		charr_humanKEGG_polysel.R
charr_indelrealign		charr_indelrealign
charr_mergetopool		charr_mergetopool
charr_mpileup_pool		charr_mpileup_pool
charr_pcangsd		charr_pcangsd
charr_polylinkR_polyselinput.R		charr_polylinkR_polyselinput.R
charr_popoolation_fst_1kb		charr_popoolation_fst_1kb
charr_popoolation_sync		charr_popoolation_sync
charr_topGO.R		charr_topGO.R
charr_treemix_loop		charr_treemix_loop
charr_wg_array_compare.R		charr_wg_array_compare.R
charrchip_WG_FST_compare.R		charrchip_WG_FST_compare.R
prep_treemix.R		prep_treemix.R