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@TorkamaniLab

The Scripps Research Institute - Torkamani Lab

Popular repositories

  1. imputation_accuracy_calculator imputation_accuracy_calculator Public

    Python 15 5

  2. metapipe metapipe Public

    A pipeline generator and runtime system

    Python 13 4

  3. zoish zoish Public

    Zoish is a Python package that streamlines machine learning by leveraging SHAP values for feature selection and interpretability, making model development more efficient and user-friendly

    Python 11 1

  4. Genotype_Imputation_Pipeline Genotype_Imputation_Pipeline Public

    Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 ref…

    FreeBasic 9 6

  5. lohrasb lohrasb Public

    This versatile tool streamlines hyperparameter optimization in machine learning workflows.

    Python 5 2

  6. Imputation_Autoencoder Imputation_Autoencoder Public

    Deep learning algorithm for imputation of genetic variants

    Jupyter Notebook 3 6

Repositories

Showing 10 of 27 repositories
  • Genotype_Imputation_Pipeline Public

    Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.

    TorkamaniLab/Genotype_Imputation_Pipeline’s past year of commit activity
    FreeBasic 9 6 0 0 Updated Jun 21, 2024
  • Cardiomyopathy_GeoMxDSP Public
    TorkamaniLab/Cardiomyopathy_GeoMxDSP’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 1, 2024
  • Genome-Tiling Public

    A Set of R Tools for Splitting up Chromosomes into Regions of High and Low Recombination

    TorkamaniLab/Genome-Tiling’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 28, 2024
  • zoish Public

    Zoish is a Python package that streamlines machine learning by leveraging SHAP values for feature selection and interpretability, making model development more efficient and user-friendly

    TorkamaniLab/zoish’s past year of commit activity
    Python 11 BSD-2-Clause 1 0 0 Updated Feb 7, 2024
  • CAD_meta_prediction Public

    Machine learning pipeline for meta-prediction of coronary artery disease

    TorkamaniLab/CAD_meta_prediction’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 12, 2023
  • lohrasb Public

    This versatile tool streamlines hyperparameter optimization in machine learning workflows.

    TorkamaniLab/lohrasb’s past year of commit activity
    Python 5 BSD-2-Clause 2 1 0 Updated Sep 9, 2023
  • frequency_analyzer Public

    A command-line tool for isolating frequencies found in accelerometer data.

    TorkamaniLab/frequency_analyzer’s past year of commit activity
    Python 1 5 1 1 Updated Jul 6, 2023
  • imputator_inference Public
    TorkamaniLab/imputator_inference’s past year of commit activity
    Python 2 MIT 2 2 0 Updated Jan 16, 2023
  • metapipe Public

    A pipeline generator and runtime system

    TorkamaniLab/metapipe’s past year of commit activity
    Python 13 MIT 4 5 3 Updated Dec 26, 2022
  • ncbi-scraper Public

    A python library for parsing data from NCBI website

    TorkamaniLab/ncbi-scraper’s past year of commit activity
    Python 0 1 0 2 Updated Dec 8, 2022
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