Otel instrumentation #121
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Otel instrumentation #121
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gaurav
added a commit
to TranslatorSRI/NodeNormalization
that referenced
this pull request
Dec 13, 2023
Code stolen from TranslatorSRI/NameResolution#121
gaurav
added a commit
to helxplatform/translator-devops
that referenced
this pull request
Dec 14, 2023
This PR upgrades NameRes to the latest data and source code. Includes OTEL settings as implemented by TranslatorSRI/NameResolution#121
gaurav
added a commit
to TranslatorSRI/NodeNormalization
that referenced
this pull request
Dec 15, 2023
This PR will add Open Telemetry with Jaegar to NodeNorm. Code largely stolen from TranslatorSRI/NameResolution#121
Open
EvanDietzMorris
added a commit
to helxplatform/translator-devops
that referenced
this pull request
Mar 27, 2024
commit 9f486c8b0ced5e6d31d9d4c89cd864532f8fd54f
Merge: 4f27542 6d2369c
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 25 11:00:31 2024 -0400
Merge pull request #873 from helxplatform/yobokop-public
making yobokop ui public
commit 6d2369c887c0c3050c943c87de5ab49be9f55d3d
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Mar 25 10:38:06 2024 -0400
making yobokop ui public
commit 4f27542b8c9ce59c96c3e26d3c619aed0119ddb7
Merge: 14a1a98 996d4c2
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Mar 19 16:07:21 2024 -0400
Merge pull request #871 from helxplatform/update/qgraph-1.2.2
bunch of misc chart changes
commit 996d4c2b60244f21619b4993393b5ba17ab6e4cf
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Mar 19 15:58:00 2024 -0400
unify yobokop/robokop container version and bump to v1.3.0
commit 54eac055366ea78958148f361bf24af5747dc38e
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Mar 19 15:48:25 2024 -0400
add yobokop specific tag
commit bf8a2b2aeae8b396d6a49e61f622dcf7090f1356
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 17:27:18 2024 -0400
make ingress properly reference release-prefixed services
commit 746c360ae3d0f92fdc22dc736d75e4065034dfa0
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 17:03:43 2024 -0400
correct yobokop env var
commit 83a0566b21befefa9b67f74a699dc338775043a6
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 15:20:43 2024 -0400
override aragorn with yobokop graph
commit 14a1a98d6a8828348711faa3b0c068274ac6f613
Merge: ae11532 d45abbe
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Mar 18 15:12:59 2024 -0400
Merge pull request #870 from helxplatform/new_yobokop
New yobokop
commit a1f1581de502f404d18f24646a95215d1b31841a
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 13:09:23 2024 -0400
remove separate yobokop chart
commit 289362f3855443369c752e30b3ea7c62e32a5cc3
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 13:09:00 2024 -0400
yobokop frontend values override
commit 3a783193748da398a2a7c655808b8b8ef0299f57
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 13:06:52 2024 -0400
add an explicit public ingress option to values file
commit 5f7b247db85b50a2677f307d89753fbdba67348f
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 18 12:53:59 2024 -0400
add yobokop values file to nameres
commit ae11532a05bb1d4688e172a95244d906dec9b34c
Merge: 8933562 19b25fd
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Thu Mar 14 13:48:24 2024 -0400
Merge pull request #869 from akadapa/develop
Changed Affinity values and memory
commit 19b25fd9f6fdf2920cfdedee5347ddb61ca6eff8
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Mar 13 22:32:27 2024 -0500
change cpu limit for ubergraph
commit 9f3e53603b83ca2f4b168ccbf8a8118ea432d6f2
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Mar 13 16:33:44 2024 -0500
changed cpu limits for ubergraph
commit 37ca9961955c50b61fd12dadf82ef824b7c33da7
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Mar 13 16:22:19 2024 -0500
changed cpu limits for ubergraph
commit d45abbe8b41b696268c7114226c13490d4b7b7af
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Mar 13 14:01:11 2024 -0400
new yobokop graph and bl version
commit 893356254b8ccff7dfaf34ab4dd23ef489814a09
Merge: 25ceb1a 185b064
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Mar 13 11:43:00 2024 -0400
Merge pull request #868 from helxplatform/plater-ncats-image-bump
bumping plater image in ncats file
commit 5ac64a1e29a7c7b5842f849a4a601dc62a10a15b
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Mar 12 23:18:11 2024 -0400
update name resolver data source
commit 25ceb1a382bb5228c6d81055f1bac9038dd12d35
Merge: bf89331 6fdef16
Author: Jason Reilly <jdr0887@users.noreply.github.com>
Date: Tue Mar 12 15:13:33 2024 -0400
Merge pull request #867 from helxplatform/cqs-update
incrementing version
commit 185b064589c35331132b235c0c946423d6a772e8
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Mar 12 14:44:57 2024 -0400
bumping plater image in ncats file
commit 6fdef16fde47bf17b411138f36c02c04b6db886c
Author: Jason Reilly <jdr0887@gmail.com>
Date: Tue Mar 12 14:33:55 2024 -0400
incrementing version
commit bf893310c0ad59d1f32c9b1d4bc0d7f682d45359
Merge: 6ece6d0 2f883e1
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Mar 12 14:11:34 2024 -0400
Merge pull request #866 from helxplatform/new_platers
New platers for treats refactor
commit 6ece6d0cb9db81cffa6ff88370146ca2edd67fc2
Merge: 7f7bdbe f1781a7
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Mar 12 11:58:28 2024 -0400
Merge pull request #864 from helxplatform/smartapi-update
removing old sri-reference-kg endpoint
commit 7f7bdbe3f75d13a7e6acefd209fe632684c5716b
Merge: cd031a0 a56890b
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Mar 12 11:54:32 2024 -0400
Merge pull request #861 from helxplatform/plater-resources
increasing resources for icees and ubergraph
commit 827936a1df8399dd9f3bc26159719fd111412b44
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 11 16:53:17 2024 -0400
prefix object names with release to allow for staging deployments in the same namespace
commit 6f7a72e6891a2766dcd3f26213d9004e46325f3f
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Mar 11 11:57:34 2024 -0400
bump qgraph to 1.2.5
commit 2f883e1394911663e6ebcc00f043b0a75c281a60
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Mar 8 15:34:40 2024 -0500
new graphs and bl_version
commit c67af0f45658cb28cb3114004ff3a53824fe6071
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Mar 8 15:34:19 2024 -0500
bumping plater version
commit f1781a757a6874bd20ec6dcb9377e6f9f7c496e0
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Mar 8 10:06:17 2024 -0500
removing old sri-reference-kg endpoint
commit cd031a0fbd102b281c45b4960b0de64ec5ba1d0c
Merge: fb831f6 9e68e63
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Wed Mar 6 08:19:07 2024 -0500
Merge pull request #859 from helxplatform/fix-renci-dev
Fixed minReplicas on NodeNorm renci-dev
commit 56ad6ef61351e5f1584d43712e90fa57f33595f7
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Mar 5 16:40:27 2024 -0500
bump qgraph to 1.2.4
commit fb831f6b08a952a9c4ef3b83d6ef6e1d6736c22c
Merge: 44031da ec5b64c
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Mar 5 12:08:12 2024 -0500
Merge pull request #862 from helxplatform/name-lookup-resources
setting cpu limits for name lookup explicitly
commit ec5b64caab91f6dea3b3dd01634430b4593ffeff
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Mar 5 12:06:40 2024 -0500
Updated default CPUs on the Solr instance.
commit a56890bcd79a965f2291c32a1eddd094b2a17b37
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Mar 4 14:29:04 2024 -0500
bumping ubergraph neo4j up more and giving web server more memory
commit 44031da420e999bfa7c31e6b813822349f476c75
Merge: d6fa756 84447be
Author: Jason Reilly <jdr0887@users.noreply.github.com>
Date: Mon Mar 4 13:14:58 2024 -0500
Merge pull request #863 from helxplatform/cqs
incrementing image version and adding write_wfr_output to values.yaml…
commit 84447be69c044794f17c7e2df78de5e4cdadce3e
Author: Jason Reilly <jdr0887@gmail.com>
Date: Mon Mar 4 12:57:31 2024 -0500
incrementing image version and adding write_wfr_output to values.yaml, which defaults to false
commit cda73d80a330be593d3c4ff9b208d9b4929aeb25
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Mar 4 12:41:46 2024 -0500
setting cpu limits for name lookup explicitly
commit 35c82022bd221f995dcb43419284b34f5895cd98
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Mar 4 12:32:09 2024 -0500
increasing resources for icees and ubergraph
commit d6fa756f9a5fdad8f0525e54cd75452add3ca82f
Merge: 92a2c65 f5987a7
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Mar 4 10:49:08 2024 -0500
Merge pull request #853 from helxplatform/plater-tolerations
changing robokopkg k8s tolerations and affinities per ITRB request
commit 92a2c652f8c3be64b1f3fc86366a0bd3ddc6a5ab
Merge: 6af0c58 d0e90f6
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Sun Mar 3 01:39:57 2024 -0500
Merge pull request #851 from helxplatform/new_camkp
new cam kp graph
commit 9e68e6354003502616ff194c0f8e4034051ebc30
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Fri Mar 1 00:40:38 2024 -0600
Fixed minReplicas on NodeNorm renci-dev.
commit 6af0c58f63132ad1e974f5f0ecd4446201292b35
Merge: 9f603dc 6a72806
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Thu Feb 22 10:07:13 2024 -0500
Merge pull request #854 from helxplatform/openapi_add_cqs
Add cqs to list of servers
commit 6a728067cbee9f87808c79aa5ceefe01de5dcfaa
Author: Max Wang <max@covar.com>
Date: Thu Feb 22 10:02:01 2024 -0500
Add cqs to list of servers
commit 9f603dcb1b1f6b3d23dadcc5154c7c8f8733d753
Merge: 79a7f27 48d695c
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Thu Feb 22 09:42:55 2024 -0500
Merge pull request #837 from helxplatform/kg-summarizer/cors
Updated kg-summarizer to v0.0.6
commit 79a7f27f76186a91c45ce6f36c47e5922b2ec387
Merge: d3e3ce8 7e88f2f
Author: Max Wang <max@covar.com>
Date: Thu Feb 22 09:42:32 2024 -0500
Merge pull request #831 from helxplatform/informationradiator
Informationradiator
commit d3e3ce8ad08437e7c04dad06e50a023d6ebcae2c
Merge: 9695b5b 880b00a
Author: Max Wang <max@covar.com>
Date: Thu Feb 22 09:41:45 2024 -0500
Merge pull request #846 from helxplatform/strider
Bump strider version
commit 9695b5b458a5e0a8e450e75e51a7dc6bb1d2f1e4
Merge: be480d6 95c7a33
Author: Max Wang <max@covar.com>
Date: Thu Feb 22 09:41:28 2024 -0500
Merge pull request #849 from helxplatform/appraiser
Bump appraiser version
commit be480d61d8c9e1b81ae81180f3c1eefb95cd6e2c
Merge: e9eabb1 95c5ea6
Author: Max Wang <max@covar.com>
Date: Thu Feb 22 09:40:39 2024 -0500
Merge pull request #847 from helxplatform/aragorn
Bump Aragorn version and resources
commit e9eabb1dc168ec9e3723c8aacc52e95f8f4f9f98
Merge: 316d1e5 2fe36ea
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Feb 21 23:25:11 2024 -0500
Merge pull request #852 from helxplatform/fix-blocklist-size-bug
NameLookup downloads a blocklist and deletes those concepts from the Solr database, but the blocklist is now large enough that it cannot be deleted in less than a second. This PR modifies the blocklist code so that it carries out deletions in chunks.
commit 2fe36ea1366bb2e96bcbfa9a92e714f0f2613be7
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Feb 21 21:36:33 2024 -0500
Added a message early on so we can see if we're using the new code.
commit a9476fd0df47f47a18ce57d8861f55c234323e9d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Feb 21 02:29:32 2024 -0500
Updated code to use split identifiers into chunks.
commit 56b8ae53a27442a183fbdf1bcb80f2e2f0c8bb41
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Feb 21 01:58:42 2024 -0500
Changed restore job have a restartPolicy of Never.
commit bab84929a979eaad1a69ab420ae3d4f855823717
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Feb 20 17:21:54 2024 -0500
Added code to chunk blocklist deletions.
commit f5987a742d63388d97d647b34dcecb8625af995e
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Feb 21 10:36:32 2024 -0500
changing robokopkg k8s tolerations and affinities for prod and test
commit 316d1e5eb10948fdebc47951994b35b0ec7e259a
Merge: 9514f00 e19572a
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Feb 21 10:33:22 2024 -0500
Merge pull request #832 from akadapa/develop
New dataset added for ac-redis
commit 9514f00a0e5fa49bdfd840b01302e9c0eb7e7ed6
Merge: c18eef1 7ff948c
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Feb 21 10:32:43 2024 -0500
Merge pull request #850 from helxplatform/u24-aragorn-and-yobokop-updates
U24 aragorn and yobokop updates
commit d0e90f697669abb4db4ab77038a57fe37f872982
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Feb 20 12:27:57 2024 -0500
new cam kp graph
commit 7ff948cf28b4eda2671c1b3c81a17d0d22ee2696
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Feb 20 12:19:40 2024 -0500
bumping aragorn version again
commit 95c7a335dda3c31dd46ec306848cd0fc8c7874b8
Author: Max Wang <max@covar.com>
Date: Tue Feb 20 12:07:29 2024 -0500
Bump appraiser version
commit c18eef1b6611a0698315801da5d88d35aba8dad2
Merge: 02680e2 b0a0add
Author: Jason Reilly <jdr0887@users.noreply.github.com>
Date: Tue Feb 20 10:54:40 2024 -0500
Merge pull request #848 from helxplatform/cqs
Fix server url and workflow runner url
commit b0a0add820b532e5ca062446b82f5d3851c748cf
Author: Max Wang <max@covar.com>
Date: Tue Feb 20 10:35:26 2024 -0500
Fix server url and workflow runner url
commit 95c5ea6661ba0e4cb31596eb4b912ec0accc8db1
Author: Max Wang <max@covar.com>
Date: Tue Feb 20 10:22:42 2024 -0500
Bump Aragorn version and resources
commit 02680e20c0f67c7bf7ea1627f43cc2be0c18d097
Merge: 3af2102 d339095
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Feb 19 16:35:54 2024 -0500
Merge pull request #845 from helxplatform/add-nameres-develop-blocklist
Replaced some NameRes blocklists with develop branch. RENCI-exp and NCATS-dev will use the develop branch. RENCI-dev and NCATS-test and NCATS-prod will continue to use the production branch.
commit 3af2102201a161f8d3d7938ca052985fd807f2cf
Merge: 269c775 b52d9ea
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Mon Feb 19 16:02:13 2024 -0500
Merge pull request #814 from helxplatform/fix-affinity-nameres
Fix affinity values for Name Lookup and NodeNorm
commit d3390952238bb2619fce1d34d75952b224a0f7e9
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Feb 19 15:29:37 2024 -0500
Replaced some NameRes blocklists with develop branch.
RENCI-exp and NCATS-dev will use the develop branch.
RENCI-dev and NCATS-test and NCATS-prod will continue to use the
production branch.
commit 269c775bf93da83c1829240bf8d5f5fbb5a708eb
Merge: 3333b46 40ad2fa
Author: Jason Reilly <jdr0887@users.noreply.github.com>
Date: Sat Feb 17 16:41:45 2024 -0500
Merge pull request #844 from helxplatform/cqs-update
Cqs update
commit 40ad2fa3c5b292b82426a4c9242a5d9222ecb3f7
Author: Jason Reilly <jdr0887@gmail.com>
Date: Fri Feb 16 15:55:44 2024 -0500
changing major minor version
commit cf82ff2e05266ceaff1d28fe70c87a46f2e1c7a1
Author: Jason Reilly <jdr0887@gmail.com>
Date: Fri Feb 16 15:55:23 2024 -0500
incrementing tag
commit ef1a2221b4ef237a2a9cc4f7612e31d9fe1c990e
Author: Jason Reilly <jdr0887@gmail.com>
Date: Fri Feb 16 15:55:07 2024 -0500
incrementing tag
commit e19572ad33107a0972033994fcdf75c4712ffbea
Merge: e687c20 3333b46
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Mon Feb 12 11:24:53 2024 -0600
Merge branch 'develop' of https://github.com/helxplatform/translator-devops into develop
commit 7f7c7832868b53bb0b351be11304e6ea401d8e96
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Feb 7 16:39:37 2024 -0500
bumping aragorn version for robokop and yobokop on u24, cleaning and updating charts a bit
commit 3333b46afa50f55b5cc42fada9ab33b7d6630ae8
Merge: 06ba787 5b6237a
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Wed Feb 7 10:40:24 2024 -0500
Merge pull request #840 from helxplatform/update/qgraph-1.2.2
bump qgraph to 1.2.2
commit 5b6237a873bf241f0e2c6b87335be46c6a040319
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Feb 6 23:08:52 2024 -0500
bump qgraph to 1.2.2
commit 48d695c61cc8e0c746560d6f8ece464d146b3fd3
Author: Joey Richardson <richardson.joey.b@gmail.com>
Date: Tue Feb 6 12:34:40 2024 -0500
Updated to v0.0.6
commit bac683cac5fd656972ca2489d9204c1bbef5f7da
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Feb 6 11:57:06 2024 -0500
add CORS ingress annotation to kg-summarizer
commit 06ba787a3970275181e10fef4b018de7a77ae863
Merge: 7c91327 f642a9b
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Feb 5 15:49:45 2024 -0500
Merge pull request #820 from helxplatform/robokopkg-update
updating robokopkg neo4j browser to the latest graph dump
commit f642a9be5f4be41b219f651acc13ec5280c72025
Merge: bcde049 7c91327
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Feb 5 15:49:09 2024 -0500
Merge branch 'develop' into robokopkg-update
commit 06d287486a1d33c47cc44bb992ca13b853db72b5
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Feb 5 15:48:22 2024 -0500
new yobokop graph
commit 7c91327c61477ee8abdda64bd2f217b7b129ac0e
Merge: 75d2295 81027e4
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Fri Feb 2 14:58:00 2024 -0500
Merge pull request #835 from helxplatform/add-nn-prod-chemical_drug-password
Updated NodeNorm loader and web prod values to new format and with the new prod password for db6
commit 81027e4ebcbe46fda6c55f4991fd8c5e34146a91
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Fri Feb 2 14:48:47 2024 -0500
Added chemical_drug_db config to nn-web prod settings.
commit 8c2b6268d59669b1b49749df3ceefa02733afc3b
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Fri Feb 2 14:45:41 2024 -0500
Rearranged nn-web prod to make it easier to diff with test.
commit b83f31f1b8390d27bbbaf336b79efe1c2523c6be
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Fri Feb 2 14:41:08 2024 -0500
Added password for prod db6.
commit ac085b7c87163dcb0cfc6668d2aba188b68d4169
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Fri Feb 2 14:39:42 2024 -0500
Updated nn-loader prod values to new format.
commit 880b00a2242b141330581d48931d740f9105f7d3
Author: Max Wang <max@covar.com>
Date: Fri Feb 2 09:38:14 2024 -0500
Bump strider version
commit 75d229573c6eba19308e1280366fa7d2d9c6802a
Merge: ba9badc e807bb1
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Feb 1 17:52:30 2024 -0500
Merge pull request #833 from helxplatform/fix-nn-web-dev
This PR includes several fixes to the NodeNorm web server and loader:
1. chemical_drug_db was previously set in nn-web, but this has been deleted at some point. This PR restores it.
2. The nn-loader Jenkins file defaulted to running clean_dbs.sh when run. This changes the default to NOT deleting the databases when run.
3. This PR includes a possible fix to https://github.com/helxplatform/translator-devops/issues/813 -- instead of writing only to a single server in cluster mode (which doesn't work in pipe mode), we now loop through adding the data to every server in every cluster. This will fail on non-clustered Redis servers, but it should be fine with the current ITRB setup.
commit e807bb111476de514f990a6801c2d060ed5a47e4
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Feb 1 16:23:07 2024 -0500
Updated README, improved Jenkinsfile documentation.
commit f7405649291f7cdbbc90b6843e09e55ffb3d65a7
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Feb 1 14:22:41 2024 -0500
First stab at incorporating the node looping code into loader-pipe-job.
commit 6dc83d0b568bd16da2d2bbef14a7054698a49b56
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Feb 1 14:12:24 2024 -0500
Set CLEAN_REDIS to no by default.
commit 081de3a2a4b52a3b97fd62724e010db919b5291f
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Feb 1 14:10:02 2024 -0500
chemical_drug_db fell out of nn-web dev at some point, restoring.
commit e687c202f0f01f3f6c36527ab86f0a16507ea8f4
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Jan 31 12:10:22 2024 -0600
modifided ncats-dev-values.yaml
commit e93847743fd7e6cd548dae0b436c5d7d5eb483f8
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Jan 31 11:29:19 2024 -0600
modifided ncats-dev-values.yaml
commit 7e88f2f3d9fb375ce36f309bd11de7f1d25a40a5
Author: Max Wang <max@covar.com>
Date: Fri Jan 26 11:47:27 2024 -0500
Set cpu resources back
commit 14b1ba2b25740f51778f2e25db310f227f0521a7
Author: Max Wang <max@covar.com>
Date: Fri Jan 26 11:46:47 2024 -0500
Fix cpu limit
commit 0bf4c7416ba6777d8b1070930dc9762d0a341bba
Author: Max Wang <max@covar.com>
Date: Fri Jan 26 11:40:56 2024 -0500
Bump memory allocation for test harness
commit 78cd628e2129589ecbd8cfd83fda66e103bd37d5
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Thu Jan 25 12:46:32 2024 -0600
added tolerations for ac
commit ba9badc336cabd0a2837b8bea7f09457cd9418a7
Merge: 0bb0f41 732811e
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Thu Jan 18 11:32:02 2024 -0500
Merge pull request #818 from helxplatform/open-api-updates
updating list of automats
commit 0bb0f41f01c9b1cf8bcc442fb3b105075ba7e80b
Merge: cd13d19 e1d849e
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Thu Jan 18 11:31:23 2024 -0500
Merge pull request #827 from helxplatform/informationradiator
Information Radiator
commit cd13d19e3b50d8da2c44013d341f8e84280170f0
Merge: 23adb2a 04a4c15
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Thu Jan 18 11:02:45 2024 -0500
Merge pull request #829 from helxplatform/robokop-u24
merging robokop-u24 back into develop
commit 04a4c152b7cdf7fa227b774046445139360cd16a
Merge: bae59e4 94195b7
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 17 14:00:20 2024 -0500
Merge pull request #828 from helxplatform/environment-based-values
Environment based values
commit 94195b71971c6cbdc4f317c1c4b9ed8ae5aa75c1
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 17 13:49:39 2024 -0500
moving default neo4j cpu limit to values.yaml and removing redundancy
commit 912a4b8c181c0f013d652a10a013544f8d9c0eb2
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 17 13:06:03 2024 -0500
fixing syntax for empty value for cpu limits
commit 539c2d684b5caa5d995a9067ae5c200a587bf69d
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 17 12:50:39 2024 -0500
giving robokopkg neo4j a better cpu request default
commit 2d9b4449e610802db5e3987a9d75435b9293e887
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 17 12:50:09 2024 -0500
cleaning up robokop removal of cpu limits, making initresources explicitly tied to neo4j deployment
commit bae59e4080552c058e45e796b30df528d55428f7
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Wed Jan 17 11:30:08 2024 -0500
newest nameres data
commit e1d849e0b257898f6d69ccb64d8e9b908e3a3844
Author: Max Wang <max@covar.com>
Date: Tue Jan 16 16:19:23 2024 -0500
Fix cron job and make public
commit 23adb2a944e443fbdde27444e120df492deacacc
Merge: 9ec1e18 d5982d5
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Jan 16 11:36:27 2024 -0500
Merge pull request #826 from helxplatform/ac-data-update-ci
bump dataset version
commit d5982d59b5dfb5f637e23d85fecaff25bd0e41ba
Author: YaphetKG <kebedey@renci.org>
Date: Tue Jan 16 11:36:00 2024 -0500
bump dataset version
;
commit 16622f912317f15518faf62694063fbad4b42b53
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Jan 12 16:14:22 2024 -0500
adding a environment based values file for robokop without cpu limits
commit fc7ae1dfd01c5fbf3fc1d9e564936ddc0f6a9bc0
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Jan 12 16:13:54 2024 -0500
changing default resource values back to something that would work for an env with cpu limits
commit fe80b2115a53605ceb3b2493c565e7109900cc71
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Jan 12 14:37:14 2024 -0500
fixing rectome tolerations indentation
commit 9dc0636c0868d7ea218a9031df4440395340273a
Merge: 7c1b5fb 9ec1e18
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Jan 12 13:53:04 2024 -0500
Merge branch 'develop' into robokop-u24
commit 7c1b5fbfe57f46b452547b4939c82e1a949fe78d
Merge: bcb58da a60cecf
Author: hina-shah <hinajoshi1084@gmail.com>
Date: Wed Jan 10 13:11:40 2024 -0500
Merge pull request #825 from helxplatform/update-qgraph-image
ENH: Update qgraph image to fix sidebar bug
commit a60cecffd558402c7e3a94e705087e7c42992102
Author: Hina Shah <hinashah@renci.org>
Date: Wed Jan 10 12:59:12 2024 -0500
ENH: Update qgraph image to fix sidebar bug
commit bcb58dae5665014cae979a5faa69675bc045ccf7
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Jan 9 22:26:45 2024 -0500
create robokop values file for nameres + use newly deployed nameres in UI
commit f7947f6e29b19004d92ef03d5f6ba9acbfa97b64
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Tue Jan 9 16:48:46 2024 -0500
bump qgraph to v1.2.1
commit 9ec1e1830169625a0b56c9d16d27243f60ad42a7
Author: YaphetKG <kebedey@renci.org>
Date: Tue Jan 9 13:04:36 2024 -0500
bump image
commit e2df717d5861279b99aee891469a370665f187f6
Author: Max Wang <max@covar.com>
Date: Tue Jan 9 10:09:55 2024 -0500
Add test harness
commit 0fc228b6e5f8b50e844a320899746dd526d0862b
Author: Max Wang <max@covar.com>
Date: Mon Jan 8 15:53:51 2024 -0500
Got everything deployed!
commit 8bc1fc774d81e42d8c360360a9d7514c4c258c29
Merge: 31bc249 11a1ff8
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Jan 8 11:47:57 2024 -0500
Merge pull request #817 from helxplatform/hetio-update
updating hetio automat infores
commit bcde04900df3455fa9256189b56a82baf4154129
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Jan 8 11:40:30 2024 -0500
updating robokopkg neo4j browser to the latest graph dump
commit 31bc24914e22a24fbcab9974ae2fd3a5e24dc7d1
Merge: 4233944 947843f
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Fri Jan 5 14:38:14 2024 -0500
Merge pull request #819 from akadapa/develop
Updated values.yaml file
commit 947843ff0c587d95939f60ab032df29460e4dd7c
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Jan 5 13:30:50 2024 -0600
updated values.yaml file
commit 3b72464ed07e95e97aa3250871b35dbb1b9b1469
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Jan 5 13:22:06 2024 -0600
updated values.yaml file
commit 7f2eacc9b6679eb24fa4e5b24c6b764600816601
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Jan 5 13:18:19 2024 -0600
updated values.yaml file
commit e24ee6d68e6dc117fd1ae17c8f54f4ca507f8b99
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Jan 5 12:19:19 2024 -0600
updated values.yaml file
commit fcbbcd8b152ed82061f13cd9df88ef2c82641253
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 3 15:18:18 2024 -0500
updating robokopkg graph and plater version
commit 4233944662a8b1fc9035077a91ca0397d77790a3
Merge: a33656b 9b95ea9
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Wed Jan 3 15:01:05 2024 -0500
Merge pull request #789 from helxplatform/redis-tpf
redis tpf server
commit 732811eeeea71dfcf7dc1cf714cd67dc3af4e7bd
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 3 14:57:53 2024 -0500
updating list of automats
commit 11a1ff80aedc74d9f3092bae5abb5ff61fdb0ba3
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 3 14:15:22 2024 -0500
updating hetio automat infores
commit a33656b75b84eb347ae35f3351186379766b0232
Merge: 1f7b5a5 af2f7ec
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Jan 3 14:02:10 2024 -0500
Merge pull request #816 from akadapa/develop
added tolerations to reactome/kopkg
commit af2f7eca90a27123a1fe1bc7a2359ea634983eac
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Jan 3 12:23:14 2024 -0600
added tolerations to reactome/kopkg
commit f4fea66326a589940887f2118a6a7958e34006b3
Author: Max Wang <max@covar.com>
Date: Wed Jan 3 09:56:03 2024 -0500
Fix service labels and some envs
commit 1f7b5a548103b507e9335719a16d0430948e6c5c
Merge: e04defc e4f95e0
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Jan 2 18:13:20 2024 -0500
Merge pull request #815 from akadapa/develop
Added Jenkins file for cqs
commit e4f95e0fe4094053f45f223e6590d014bb4679b8
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Tue Jan 2 12:33:54 2024 -0600
ubergraph testing tolerations
commit 96f194aebb2a5f820d93850d93e0a8a639985704
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Tue Jan 2 12:16:13 2024 -0600
ubergraph testing tolerations
commit a7d937fd4fa52e20e49b7a519783df9bdf5b1597
Author: Max Wang <max@covar.com>
Date: Tue Jan 2 10:46:08 2024 -0500
Getting closer
commit 4d1469e2800f0273bd261c07eafb1c1338acea18
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Thu Dec 28 12:38:05 2023 -0600
updated values.yaml
commit 55680dd415060fa6aaf396da4b19873f3b8f4424
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Thu Dec 28 12:31:14 2023 -0600
updated ingress values
commit cc874f1463c6c5e260da1f6c2269ed74916742b8
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Thu Dec 28 12:17:08 2023 -0600
updated ingress values
commit d4767acc2b2a3d88301a0e48cff6536ed9cf8afa
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Thu Dec 28 12:13:32 2023 -0600
updated ingress values
commit 7ce49593d93063ff336a868168abc9f989e63675
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 27 13:34:36 2023 -0600
updated helm values by adding tolerations/affinity
commit 6a576d9b22139ee7c226fe402f556de0ad57ad25
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 27 13:29:29 2023 -0600
updated helm values by adding tolerations/affinity
commit f95c4cba84351faf73417be269c730c57c1444f4
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 27 12:32:51 2023 -0600
addind Jenkinsfile in ci for cqs
commit b52d9ea8558c843222d836c42a64becf24d1b2c3
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Fri Dec 22 20:56:24 2023 -0500
Default affinity values for NameRes were in the wrong place.
This fixes that.
commit e04defce48c012949bf2ded1307f6468db871062
Merge: 2646f81 3b6ae20
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Thu Dec 21 09:03:11 2023 -0500
Merge pull request #811 from helxplatform/reactome-jenkins-fix
adding reactome
commit 3b6ae206153d766b7d4ca8903388c7ebdc318d0d
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 17:10:54 2023 -0500
adding reactome
commit 2646f81a661d506cec0d13ef982045f895b8db5b
Merge: d066957 411899b
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 15:40:28 2023 -0500
Merge pull request #804 from helxplatform/new_plater_graphs
New plater graphs
commit 411899bdb51089089675ff23ebaeb424a7fea099
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 15:39:56 2023 -0500
updating plater list
commit 240765655cfe19452f8c07db78919c7671bdb77a
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 15:36:42 2023 -0500
fixing indentation typo
commit 7b9fd661eee2d8ce064943b98b632ae7a8dea92b
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 15:36:14 2023 -0500
adding node affinities and tolerations to new platers
commit 75ef226aa309b95b0579899b66464902113cb8e1
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 15:35:27 2023 -0500
removing empty line to make the ncats values files consistent
commit 9ae9e9e2aff9f73bdfc3eeec9bfc30ebe0c28f59
Merge: c4a75b1 d066957
Author: YaphetKG <kebedey@renci.org>
Date: Wed Dec 20 14:49:40 2023 -0500
Merge branch 'develop' into new_plater_graphs
commit 9b95ea92194f9142e56b94dc6c5a94845b5929e1
Author: YaphetKG <kebedey@renci.org>
Date: Wed Dec 20 14:41:56 2023 -0500
latest image
commit c4a75b19e35e6668402e4ce69d6d3baa3f5fa002
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 20 13:12:27 2023 -0500
bumping plater image again
commit 7d2a8577cbb5db754593dc679a0f3eed683c6808
Author: Max Wang <max@covar.com>
Date: Wed Dec 20 12:50:52 2023 -0500
Fix all the pod names
commit 0bee1f2f8a23587e3e2bd98b3bc3d9d7dacdf772
Author: Max Wang <max@covar.com>
Date: Wed Dec 20 12:32:36 2023 -0500
First attempt at actual deployment
commit d066957af519156984046f40d2b8ada049f88d1e
Merge: a8cb051 92b6d86
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Wed Dec 20 11:53:58 2023 -0500
Merge pull request #787 from akadapa/develop
Feat: Added values to NCATS Tolerations/Affinity to sri-plater
commit 92b6d86db88df6f3182a87dec1dad9d903ea4ca9
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 20 10:47:53 2023 -0600
added tolerations and affinity
commit 2a606595be9d46d5b7f3911c582f5ca1e3129a35
Author: YaphetKG <kebedey@renci.org>
Date: Wed Dec 20 11:45:19 2023 -0500
new version
commit d05b58380ae5e623d06bccb6a6a1e20c85eea044
Merge: 7c60b55 a8cb051
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 20 10:39:35 2023 -0600
merge conflicts resolved
commit a8cb05112dc5621aff654057cdf5f8e749480b90
Merge: 23217cf 2734428
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Wed Dec 20 10:44:11 2023 -0500
Merge pull request #807 from helxplatform/upgrade-nameres-v1.3.10
Upgrade Name Lookup to v1.3.11
commit 23217cfbc3223f49c16a8e2fdee0edf83c8bf346
Merge: 3957414 2ac11ef
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Wed Dec 20 10:27:29 2023 -0500
Merge pull request #790 from helxplatform/ac-multiquery
ac multiquery
commit 2ac11ef99f8d75aa3fbcd4734390f9cca1f05b85
Author: YaphetKG <kebedey@renci.org>
Date: Wed Dec 20 10:25:12 2023 -0500
update data url and default redis memory
commit 486abbed43609c0b88b63af1b55de8288e30e6db
Author: YaphetKG <kebedey@renci.org>
Date: Wed Dec 20 10:24:02 2023 -0500
remove copy chart
commit 273442837d1864dc9083a2d45bdaf230f93ea4a9
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Dec 19 21:55:08 2023 -0500
Upgraded NameRes to v1.3.11.
commit d4b20c1339ceda32cee3505a950c3083ab144ef4
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Dec 19 21:49:07 2023 -0500
Upgraded Name Lookup to v1.3.10.
commit 3957414878aa8bf82e76044770773e1d80164169
Merge: bce77d5 d702ab9
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Dec 19 18:14:54 2023 -0500
Merge pull request #806 from helxplatform/update-nodenorm-and-nameres-test
Updated NodeNorm Test settings and upgraded to v2.3.5
commit d702ab9414ae91c97b1d970603b4dab7763f6258
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Dec 19 18:09:17 2023 -0500
Upgraded NodeNorm web ITRB test settings.
commit c1e76b7dd3015ac82239073d5d8c9ef184f11c41
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Dec 19 18:07:15 2023 -0500
Upgraded nn-loader to v2.3.5.
commit 24bb0e10a45fa5e572f6049c18cba38ec2bba22d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Dec 19 18:06:15 2023 -0500
Updated nn-loader test settings.
commit cf1bb508efc597ef382f87c204e6e874529ac3cb
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Dec 19 16:44:51 2023 -0500
bumping plater version
commit bce77d5d64f1aadc52c386d4908ef856bad050c3
Merge: 11dafbd 40c993a
Author: Max Wang <max@covar.com>
Date: Mon Dec 18 16:23:50 2023 -0500
Merge pull request #794 from helxplatform/strider
Bump strider version
commit 11dafbd689c174ac0571bd5a9ff19fe359cc7f30
Merge: 957a36c 5846ab9
Author: Max Wang <max@covar.com>
Date: Mon Dec 18 16:23:40 2023 -0500
Merge pull request #795 from helxplatform/aragorn
Bump aragorn version
commit 957a36c69e3ae6ad70a91d517f8b5b2a4b34c1df
Merge: 6a2e0bd 6e3f40a
Author: Max Wang <max@covar.com>
Date: Mon Dec 18 16:23:18 2023 -0500
Merge pull request #796 from helxplatform/answer-appraiser
Add files for dev deployment
commit 5846ab90355ea015b62f642c68a46579a92bab7c
Author: Max Wang <max@covar.com>
Date: Mon Dec 18 16:17:57 2023 -0500
Bump another patch version
commit e31e2c3f8faf25c79eefba71d28545168085ae25
Author: Max Wang <max@covar.com>
Date: Mon Dec 18 16:15:37 2023 -0500
Working on getting the nginx conf working
commit 7b71976fa4abbb2e8c072ee59740a206b9ce6be4
Merge: 4ed362f 6a2e0bd
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Mon Dec 18 15:06:38 2023 -0500
Merge branch 'develop' into new_plater_graphs
commit aa3096796a3dd41294eba2628138035113365587
Author: YaphetKG <kebedey@renci.org>
Date: Mon Dec 18 14:49:53 2023 -0500
image version bump
commit 6a2e0bde237a229178b3aef39a4c46e6ac571a4d
Merge: 59c28df 4b70ae7
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Mon Dec 18 10:23:27 2023 -0500
Merge pull request #797 from helxplatform/wfr
Bump wfr version
commit 59c28dfa884d5953c8040a1e729e48ee759978cf
Merge: 598387e e2b02dd
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Mon Dec 18 10:22:57 2023 -0500
Merge pull request #798 from helxplatform/openapi-spec-aggr
Add answer appraiser dev to aggregator
commit 598387e7577addab554e1ee35dce5a657f455b8a
Merge: 54ab6a2 dbd1670
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Mon Dec 18 10:22:23 2023 -0500
Merge pull request #802 from helxplatform/dumb-little-fixes
Fixed Chart version for name-lookup
commit dbd1670b981f233b9c671582c008062df2d6ec2d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 10:15:07 2023 -0500
Fixed Chart version for name-lookup.
commit 54ab6a24a20970fbff1896b78a313bb10cb160a8
Merge: 48902fb 00e6ba6
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 10:02:40 2023 -0500
Merge pull request #801 from helxplatform/add-otel-to-nodenorm-and-nameres
This PR upgrades NodeNorm to support OTEL and adds OTEL settings to NameRes. After this PR, both services should be connected to the CI OTEL setup.
commit 48902fb07f54a14b95cd7a4c893f04298a878f3d
Merge: 28099b5 8792b8e
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 10:01:44 2023 -0500
Merge pull request #792 from helxplatform/fix-pipe-spacing-nodenorm
This PR fixes several issues in the NodeNorm loader that we discovered in trying to load this data into ITRB:
- `--tls` did not have proper spacing around it because of incorrect use of `{{-`.
- When using `redis-cli` with a Redis cluster, the `-c` flag is necessary to ensure that `MOVED` and `ASK` redirects are followed. This has now been added when the `is_cluster` flag is set.
- `BGSAVE` appears to be unnecessary on the cluster, and so this is removed when the `is_cluster` flag is set.
- We get a lot of `MOVED` messages from redis-cli, so we now filter them out with a crude grep to make it easier to spot actual errors.
- The version information in nn-loader's `ncats-images-meta.yaml` file should never be used, but for completeness I have updated it to the latest version.
commit 00e6ba6ba02be20ee5aed18b23c3cfd2c3579380
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:57:56 2023 -0500
Added OTEL settings to NodeNorm and NameRes Test and Prod.
commit cd12ecfc049303f948abe40c5f73198c68bb5484
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:48:58 2023 -0500
Upgraded NameRes to v1.3.9 and added OTEL config.
commit c76311554aa23ae8c0a8a7a9ab47a7124e77826f
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:45:09 2023 -0500
Upgraded NodeNorm to v2.3.5, which supports OTEL.
commit 8792b8eebbb79611a3fb4dace420afcb5cef0fb1
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:32:32 2023 -0500
Removed change that is more reasonably tackled elsewhere.
commit af06dfc8e83bbbc4f4ba900d1b0aa36d48c8dee4
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:29:28 2023 -0500
Since `-e` is back on, getting to the end of the file does mean success again.
commit 5472a37a0ed985419b4403bc139275a641605677
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:28:11 2023 -0500
Improved pipe-job, removed sleep.
commit 07cd2727128dededffc04f4f1bad960c9d1cadb1
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 18 09:25:52 2023 -0500
Updated nn-loader images-meta for completeness.
I'm pretty sure this isn't used, but why not.
commit 5d1a0efb5ae7ed0ce0e87fa3a33d286b5c15c6e9
Author: Max Wang <max@covar.com>
Date: Fri Dec 15 15:13:17 2023 -0500
Add initial charts from ze repo via kompose
commit 4ed362fb01a10fc27dc45f48a26f23470b201ffc
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 11:58:58 2023 -0500
bumping plater image version
commit ff6f96810a0d6846da660c2fddfe056472fd8af3
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 02:26:07 2023 -0500
removing biolink
commit a6a6fb39c35feafcde0427e9344024a74ed1d550
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 02:21:05 2023 -0500
adding in Jason's metadata download improvement
commit 8fca3df40f5a0360a8e7e8e72dd7a9868efe937e
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:53:39 2023 -0500
new reactome and binding graphs
commit 9bd66bae1a3acfd9d61e68a3b30686ef52ce74bc
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:44:56 2023 -0500
bumping plater version
commit c1ec477e55f781a078320a371d6c4d3765191836
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:38:39 2023 -0500
renaming/moving sri-reference-kg to monarch-kg
commit 80c362f76233d47be9bd6eda6152ded104969a52
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:30:12 2023 -0500
adding reactome and binding-db
commit 4c2c15c4b1fc60262284c46bdc7f35762959c2b4
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:19:42 2023 -0500
fixing reactome and binding db urls
commit 6efad2a42a538ee2b82c6cd3db87811fd7e31c0b
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:14:14 2023 -0500
removing ubergraph nonredundant
commit fb6cf5b58df1861553a1ef706b1fef895d0d2d3c
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Fri Dec 15 01:14:00 2023 -0500
new batch of graphs
commit 7b5e97d664f7d42a478af24515cb1e9606c73a0c
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 21:27:06 2023 -0500
Improved logging to figure out what's wrong.
commit 28099b5df73685ca0ba45e543603b136855b800d
Merge: 94b2198 152cc99
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Thu Dec 14 18:45:13 2023 -0500
Merge pull request #799 from helxplatform/more-disk-space-for-nameres
Added more space to name-lookup
commit 152cc992d1acf29b7b96c2302303cb7eea6bbccd
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 18:43:33 2023 -0500
Added more space to name-lookup.
commit efa7a5eb69fb3845d038e19f5992ed56cbcb59e2
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 18:10:45 2023 -0500
Moved `-c` to the front.
commit 1258ff87d5750fa753d21702c6644d797cb75921
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 17:58:56 2023 -0500
Updated ncats-images-meta.yaml to v2.3.4.
commit e2b02dd032e1c06597afc2f0f062f17184bc5f3d
Author: Max Wang <max@covar.com>
Date: Thu Dec 14 16:07:15 2023 -0500
Add answer appraiser dev to aggregator
commit 4b70ae713561550a5ce20f9cb43c4c3163be13bd
Author: Max Wang <max@covar.com>
Date: Thu Dec 14 16:06:19 2023 -0500
Bump wfr version
commit 40c993a9e43ffe9241c1539980025768f1a4b035
Author: Max Wang <max@covar.com>
Date: Thu Dec 14 16:05:14 2023 -0500
Bump strider version
commit 8e09a98fffc8a463d3930323a3d6618cc598519b
Author: Max Wang <max@covar.com>
Date: Thu Dec 14 16:04:25 2023 -0500
Bump aragorn version
commit 6e3f40a928891a7c63c55c2ae47bebef909e28d2
Author: Max Wang <max@covar.com>
Date: Thu Dec 14 16:03:35 2023 -0500
Add files for dev deployment
commit 408fb2c8f1fd8493803d42f513bdf5b8c53ecec5
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 14:07:25 2023 -0500
Added cluster mode to `redis-cli`.
commit 94b219801fe08d8c089005a0e676d333329fd47d
Merge: d3bbadb c43bd8e
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 11:55:45 2023 -0500
Merge pull request #793 from helxplatform/forgot-to-change-ncats-images-meta
Updated Name-Lookup ncats-images-meta to latest version
commit c43bd8e0e6c266c6b5cf6967baa12a1a8bbb7806
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 11:49:38 2023 -0500
Updated Name-Lookup ncats-images-meta to latest version.
commit d3bbadb5b2f6474525c6ea2be7b0f19de2af84a8
Merge: 2fca3ab e12580c
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 11:36:57 2023 -0500
Merge pull request #785 from helxplatform/upgrade-nameres
This PR upgrades NameRes to the latest data and source code.
Includes OTEL settings as implemented by TranslatorSRI/NameResolution#121
commit e12580c1c3540ba2faac3cfd32958f0630bfbe20
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 11:31:27 2023 -0500
Updated dataUrl for NameRes.
commit 973fa0a25895e5b494a8ac5f11a613a0bb43e8a4
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 10:50:31 2023 -0500
Fixed spacing in TLS.
commit 2fca3abf8507cdb5ec78d028c0415c16246ff774
Merge: f04babb fb479f0
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 10:14:10 2023 -0500
Merge pull request #768 from helxplatform/nodenorm-add-pipe-as-loader-option
This PR is intended to modify `node-normalization-loader` to add a `restore` mode. If run in `restore` mode, the loader will create a Job for each database, which downloads the RDB file for that database and then [pipes the file into redis-cli](https://stackoverflow.com/a/70022239/27310).
In addition, this incorporates changes from two previous PRs: https://github.com/helxplatform/translator-devops/pull/662 and https://github.com/helxplatform/translator-devops/pull/720, which increase the memory settings for some Redis instances, upgrade Redis to 16.13.2, and add the chemical_drug_db for Drug Chemical conflation.
commit fb479f069d3dc24867a33c83ea836ec6e09087c0
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 03:22:26 2023 -0500
Fixed NodeNorm-loader ncats-dev settings.
commit c746b2b2c83cc0c80fd2875d6d17b4d492bbbb1c
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 03:11:19 2023 -0500
Removed unnecessary `--pipe` for BGSAVE.
commit 0627905c41ad9b451c46cd65614b78f97fc8b2ab
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 03:06:21 2023 -0500
Got affinity/tolerations to work, I guess.
commit b08fb6ea06f9c6611530af9a275fc71495c144f2
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:49:24 2023 -0500
Removed nodeSelector.
(I think this is part of affinity now?)
commit 0ad55839d6deb041329e8e5cdf910ffe8d66a410
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:45:49 2023 -0500
Added empty app.affinity and tolerations.
commit fbaa108f1c39c040611b134386fc86be97809f26
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:43:39 2023 -0500
Increased id-id storage information.
commit 41c92bff41aae61ac145157957386bb721d68d40
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:42:24 2023 -0500
Updated renci-exp settings.
commit 9053009cb141270f9425f11bafc038df5da171f7
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:39:14 2023 -0500
Removed incorrect Redis settings.
commit 54bca56c141d5ee451cd1e286cade4846f5bbbd2
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:36:37 2023 -0500
Updated RENCI exp for last night check.
commit 8e9c3d8fc6b8d871daeb5862c68df2627f3e9e7b
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:34:16 2023 -0500
Set default mode to restore, upgraded NodeNorm to v2.3.4.
commit 28b69d47a5bec0b15a066fa0b534e8e97d592943
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:33:29 2023 -0500
Increment versions in Chart.yaml.
commit 6cdacaab7d40efa8d1d3a4bfed3b4b6440f176b3
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:28:14 2023 -0500
Upgraded x_trapi and NodeNorm CI OTEL.
Adding OTEL won't be functional yet (NodeNorm v2.3.4 is missing that),
but it won't hurt to add it now.
commit 9fd1e642763d40d2501fa32427541a623f78d23d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:22:34 2023 -0500
Updated NodeNorm RENCI-dev to bring it in sync with RENCI-exp.
commit 5b6a4246040b26a81c4431cca8a96e8cc224301b
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:18:37 2023 -0500
Updated NodeNorm version in RENCI exp.
commit 03dea14fc639306464554a29f66877d7bf59097c
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:18:14 2023 -0500
Incremented app version.
commit 916dba4fd1e292563e13584ff68ea589b70fb418
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:15:59 2023 -0500
Fixed ingress.
commit 984bba755b931eb51d9e7cd8e8bcbdba09e99593
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:13:38 2023 -0500
Added a prevTrapiVersion so prev links continue to work.
commit 993c111623b246cd7d9717a73735a71505d36c8b
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:10:17 2023 -0500
Restored TRAPI version to 1.4.
commit eefaa5d2a53dea2b16c4cf7cf11bbbc15ed2e859
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:04:47 2023 -0500
Upgraded renci-exp to NodeNorm v2.3.3.
commit 6fd884daf31fb17627c51a54c5d7a814f0e6d823
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:02:59 2023 -0500
Changed RENCI-exp trapiVersion to 1.3.
commit fe12b871f9496d68607ec92e609a4a8a4de6c384
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:02:11 2023 -0500
Incremented NodeNorm version in values.yaml.
commit 0de61c969d0b15cd2ce441a82a595a3527d5605d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 02:01:30 2023 -0500
Incremented NodeNorm version for NCATS.
commit 7158b557953c7b055fa69cc74e0c17d329f09ee6
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Dec 14 01:59:28 2023 -0500
Incremented Chart.yaml versions.
commit f7a6ecf5d44b194249b0e2ee71d44616b4ea3ee2
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 22:17:02 2023 -0500
Upgraded NodeNorm to v2.3.3.
commit f04babb2e81ea91d8dff2ed59476090d99b1556a
Merge: 1b7cf23 48fe10a
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Wed Dec 13 15:18:19 2023 -0500
Merge pull request #791 from helxplatform/cqs
Add CQS
commit 48fe10a9b5b8c4cedea05b67f93ad1f151fdaed9
Author: Max Wang <max@covar.com>
Date: Wed Dec 13 15:16:05 2023 -0500
Add CQS
commit 7c60b55dd4c8b4d4e2de97289cb8f4fb02669972
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 13:21:05 2023 -0600
added tolerations and affinity
commit e48ecbeb3dd47917c706b409420438011e30ec56
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 13:12:28 2023 -0600
added tolerations and affinity
commit 315c46c0766b1b2ddb28fd4a3d403d2eaa16512a
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 13:02:44 2023 -0600
added tolerations and affinity
commit ee8d61b716c18ab204d4c5bcd2ed0ec06308d5ab
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 12:32:46 2023 -0600
added tolerations and affinity
commit dd8c5c16d54a579599534af7e56fe02869cd8c92
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 12:04:37 2023 -0500
Added password for chemical_drug_db on ITRB CI.
commit d03483ca23cb7d4bcce79097da71ea17932924d0
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 10:46:42 2023 -0600
added tolerations and affinity
commit 3c0a4275883c4fba7241b8ade9e1491e34e08cb1
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 10:40:43 2023 -0600
added tolerations and affinity
commit 01ffe3e5052dc50beaad8a1d5cf43167136bca55
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Wed Dec 13 11:33:38 2023 -0500
bump api-docs to 2.1.0
commit 9153253548a149f4775dff576c5d6a762f40e5c8
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 13 10:29:51 2023 -0600
Adding toleration and affinity
commit 8975c07068891c10ba3cb009021325c2fb1f00c3
Author: Olawumi <wumirose@gmail.com>
Date: Wed Dec 13 09:25:47 2023 -0600
changed v2.3.0z_trapi14 to v2.4.0z_trapi14
commit 1fa5ffae7b04808120c2459e066cb1edbaa28a9a
Author: Olawumi <wumirose@gmail.com>
Date: Wed Dec 13 09:11:21 2023 -0600
ac multiquery helm chart
commit 01e10d70d740f71901d2c6ee9846fdfa5c39d3b6
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 03:37:47 2023 -0500
Set up Jaegar for renci-exp.
commit 0d6ed7b02c9b8dad7c32b6d8ae5ddfb61ff3ea52
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 03:36:37 2023 -0500
First stab at adding OTEL.
commit 44822992b97b76a3e593bba8a52786167bdc9bda
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 03:05:00 2023 -0500
Incremented NameRes to v1.3.9.
commit fa5df6a7b871edeaf5b52cff45bb84cdc3c02fa2
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 02:49:46 2023 -0500
Oops, put the otel-instrumentation tag in the wrong place.
commit 7d2b37f9b3833c55c04095423ba41079b5d1aaf8
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 02:42:59 2023 -0500
Added Translator Exp Jaeger host/port.
commit 37692293ffe0432c747554e17a21e1b994f7a7fb
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 02:34:11 2023 -0500
First stab at adding OTEL env variables.
commit eda1d1c7d9f805deb4cebc51463b999b786404b7
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 02:24:16 2023 -0500
Changed NameRes version to otel-instrumentation for testing.
commit 513b053f82d7e6b2f6eaad6a4afb65cd5fa4850e
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 01:13:11 2023 -0500
Updated exp to fix-issue-221 for testing.
commit cbf69bab90473328a601995e34d18ef7542db0b7
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 13 00:05:37 2023 -0500
Moved tolerations/affinity to `web`.
commit abb742c763cf3ddf2c8d8152d3915fa8183ab994
Author: Max Wang <max@covar.com>
Date: Tue Dec 12 15:40:44 2023 -0500
Initial commit of the information radiator
commit 53dd8e2932525996c409a81b735be641c3ef88a0
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Dec 12 12:01:28 2023 -0500
Upgraded NameRes Dev to v1.3.8.
commit 3971d873692458ae673334ae8e61a4eb92df1ba0
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Dec 11 00:55:57 2023 -0500
Upgraded RENCI-exp to NameRes v1.3.8.
commit a99e0fed601d51b836dd21ce17c32fc8d5874f11
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 15:30:34 2023 -0600
modified values.yaml
commit 3f83f87a76f076b3e30dc23da664fc8421d76829
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 15:25:28 2023 -0600
modified values.yaml
commit 31b70e2cfe0098db5e94d2410da0f1bc14c38204
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 15:12:31 2023 -0600
modified values.yaml
commit 1df711ad8e3fe5646bd526897b7dc4659afffe29
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 15:04:31 2023 -0600
added tolerations to biolink
commit b03e18b98868bb949185768899d82e7f5c7fd970
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 14:40:03 2023 -0600
added tolerations to automat
commit 3cf52985fc36abfdd481a4238200af805b4144da
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 14:31:43 2023 -0600
added tolerations to automat
commit 59c5bac765a5ced2b0ce5f56fae82427a57203d0
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 14:20:27 2023 -0600
added tolerations to answe-coalesce
commit 572b4935242db9bc798d960ed8f664fd11d5a146
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 14:18:43 2023 -0600
added tolerations to answe-coalesce
commit 77d336485b07223bb9346eb7ae81b4d870f2bdec
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Fri Dec 8 13:37:37 2023 -0600
added tolerations to answe-coalesce
commit 7d488862321a1c4ff6059efbcc2183c5c556fee6
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Thu Dec 7 13:32:06 2023 -0600
added tolerations to answe-coalesce
commit 311b15f7cc2296a25edc01fe708f141fc116a1ca
Author: YaphetKG <kebedey@renci.org>
Date: Thu Dec 7 10:56:00 2023 -0500
redis tpf server
commit eff18411259c3f9bec21ec6e260772d1cd241b65
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 6 15:29:46 2023 -0600
Added toleration/affinity to aragorn-ranker
commit 6d245936041fe0045abb6d5cb9afd41c6727e217
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 6 16:29:42 2023 -0500
Changed default NodeNorm version back to v2.1.1.
This should be overridden for ITRB, but it's not worth the risk.
commit 76bce8ac428450bce6daa2aeb9a3a64828238a0b
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Wed Dec 6 15:02:57 2023 -0600
Added toleration/affinity to aragorn-ranker
commit 8ab8b62397a3496f01d9b11e4a2de058387c2b21
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 6 15:31:17 2023 -0500
Added a BGSAVE after the data has been restored.
commit c3bd030e39df719a6e7a6acb562c8c2143675103
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 6 15:26:07 2023 -0500
Added affinity and tolerations to nn-web-server as well.
commit 38235f0fe1559cc65ca00fb34fed52133c9aafa1
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Wed Dec 6 15:22:04 2023 -0500
applying init container resources for neo4j seed container
commit 422a4ff0ccd4ff384b27c1eab0bfe5a7adb35b08
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 6 15:20:50 2023 -0500
Added affinities and tolerations.
I copied them over NameLookup, but they appear to be Translator-specific
rather than NameLookup specific.
commit 24123278faf8175150be72418e64fa754d974043
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Wed Dec 6 15:13:57 2023 -0500
bump api-docs to 2.0.1
commit 79161646dab490c59cc516d6c5d8873af7da367d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Dec 6 15:11:12 2023 -0500
Added securityContext back in.
commit 6cc8f9bc58cd121b29d9300c3855c71b242e4a26
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Tue Dec 5 15:30:58 2023 -0600
added tolerations to ontology-kp
commit 338e36c0b1d40eacc48374e4c9fe1db07a299d55
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Tue Dec 5 14:39:47 2023 -0600
added tolerations to ontology-kp
commit 701833f9a10773d2b973026c30f0081261b32c62
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Mon Dec 4 16:25:40 2023 -0600
added tolerations to sri-platter
commit 9443ab0e92bc2cd9bcb547090f18e9c15517c670
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Mon Dec 4 16:11:38 2023 -0600
added tolerations to ctd
commit 2705239d028dd64e52124fcb112aae825090c4a8
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Mon Dec 4 15:29:54 2023 -0600
added tolerations to cam-kp
commit 4367b547dafadffe12a0d90594dd98a31e95ec2c
Author: akadapa <saiaditya.kadapa@axleinfo.com>
Date: Mon Dec 4 15:16:08 2023 -0600
updated tolerations for cam-kp
commit aff7520f0ca02a79db457e55a40459ea69cedbf9
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Dec 4 14:48:16 2023 -0500
bump landing page to v2.0.9
commit 7ab4fb21a8ac302d42f63bf027cb522935a34292
Author: Olawumi <wumirose@gmail.com>
Date: Thu Nov 30 09:49:20 2023 -0500
Changed tag and redis memory limits
commit 7e1db2ba1b781c264ccffe56236f1e14c36b2d90
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Nov 29 13:23:58 2023 -0500
Upgraded renci-dev to 2023nov5.
commit a0b93809dd213841b648b2827ccffdb9dd922c2a
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Wed Nov 29 13:22:56 2023 -0500
Updated renci-dev and renci-exp to fix-issue-229.
commit 72dffaef899d9b4f05071e2ecb13bafc96c1feec
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Mon Nov 27 13:44:54 2023 -0500
bump landing page to v2.0.8
commit 04f6167b83368b18caba0cf305917ce202d2441d
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Tue Nov 21 15:24:40 2023 -0500
redirects for old URLs
commit 1b7cf2331cf0f10296a61eff494ee023f24dae20
Merge: 816daf9 21a81cd
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Nov 21 11:07:06 2023 -0500
Merge pull request #774 from helxplatform/new-monarch-kg
New monarch kg
commit 816daf90830c4fdc7d79c1c8384bae07c83df454
Merge: 35156af daa8d39
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Nov 21 11:06:55 2023 -0500
Merge pull request #784 from helxplatform/remove-biolink-plater
removing biolink plater
commit 35156af2ddd52d8c3cedccc03d2f9142a68f89a0
Merge: 75c8822 0ba849d
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Nov 21 11:06:44 2023 -0500
Merge pull request #786 from helxplatform/plater-nodeselectors
adding node selector, tolerations, and affinity placeholders to plater
commit 75c8822b024758aac52ba35e6df72f9f59827971
Merge: 84bd625 7f893c0
Author: YaphetKG <45075777+YaphetKG@users.noreply.github.com>
Date: Tue Nov 21 11:06:32 2023 -0500
Merge pull request #783 from helxplatform/covid-kop-adjustment
covid-kop resource adjustment
commit 95cea02d21c4f8596acbfb72fc4e85c8677fad38
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Mon Nov 20 00:18:05 2023 -0500
Reset Blocklist URL after branch test.
commit fa155d85bfd791343dc3f4085a5a12c983f314f2
Author: David Glymph <Woozl@users.noreply.github.com>
Date: Fri Nov 17 11:05:02 2023 -0500
bump qgraph to v1.2.0
add README documentation
commit a90b193c747a8333c483c4172ee80072953731d9
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Nov 16 17:46:00 2023 -0500
Updated blocklist to test new one.
commit f900c8600178c51354fca556a4b844fbace8fc03
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Nov 16 17:35:17 2023 -0500
Upgraded RENCI exp version and database location.
commit 5f93a5daabc027c3a9c6dac09e1670e1a7a44e3d
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Nov 16 16:59:22 2023 -0500
Upgraded NodeNorm to v2.3.2.
commit c46331605830b4e517beed69ae117de708526fed
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Nov 16 16:35:56 2023 -0500
Removed contents of values-populated.yaml.
These should all be in the ITRB-specific files now.
commit f2578b7f11f9e543005825221f6917a0e78ab6cb
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Nov 16 16:33:13 2023 -0500
Upgraded NodeNorm to v2.3.1.
commit 0f0cedc6cac0c2810c03d084a49521a78a4b4a0b
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Thu Nov 16 16:32:48 2023 -0500
Updated NodeNorm-exp.
commit 648d85540a256ebca8aa93411fd87baa6cf8e2a9
Merge: 9398e61 313d0c7
Author: Evan Morris <evandietzmorris@gmail.com>
Date: Thu Nov 16 01:02:20 2023 -0500
Merge branch 'new-icees-kg' into new_plater_graphs
commit 6932bd2497d00a0c12c3be2e04251ae8d069b5dd
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 12:39:41 2023 -0500
Updated Docker tag.
commit 3aa84a92eebac8c709a38467ade227ea8a6e97f7
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 12:33:34 2023 -0500
Removed unnecessary install codes.
commit b9dad77d4f78619606358a29f50cefce0ae61497
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 12:32:04 2023 -0500
Updated nodenorm-loading and moved to values.yaml.
commit fe7ad528ab159f834a451d48c87bff316b8af1fb
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 11:51:53 2023 -0500
Fixed Redis password.
commit 165fcc30ca4135d57b1e8817047ed2722858cb46
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 11:36:28 2023 -0500
Updated loader to take connectionDetails into account.
commit 39d3fbf2cab526ab8ba33445325f350214a00019
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 11:35:14 2023 -0500
I don't think we have ITRB-wide settings any longer.
commit 5f46014be6c905078fd5f074d88769a1e4798939
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 11:30:08 2023 -0500
Updated file delete command.
commit 72f75578f8c2b3dd5c88b817b997a190ae4f9b78
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 11:26:10 2023 -0500
Updated restoreURL and host_name for renci-dev-values-populated.yaml.
commit ff19af4131b81904003e37467cf7bbaa2a8af596
Author: Gaurav Vaidya <gaurav@renci.org>
Date: Tue Nov 14 11:2…
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otel stuff in place, helm changes required are just passing the following env vars:
Closes #105.