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  1. ULTRA Public

    ULTRA Locates Tandemly Repetitive Areas

    C++ 7 1

  2. soda Public

    A web framework for visualizing biological annotation.

    TypeScript 2

  3. uhoh Public

    A simple tool to back up GitHub repositories.

    Dart

  4. A fast, AVX2 accelerated FM index library

    C 14 1

Repositories

  • AvxWindowFmIndex Public

    A fast, AVX2 accelerated FM index library

    C 14 BSD-3-Clause 1 2 0 Updated Jan 28, 2022
  • polya-soda Public

    A soda visualization to help debug polyA output.

    TypeScript 0 0 0 0 Updated Jan 26, 2022
  • rmsk-soda Public

    A soda visualization for RepeatMasker Transposable Element annotations.

    TypeScript 0 0 0 0 Updated Jan 26, 2022
  • Mirage Public

    Mirage generates multiple sequence alignments of proteoforms by mapping sequences back to their coding regions on the genome and then compressing those mappings into alignments.

    Perl 3 BSD-3-Clause 3 0 0 Updated Jan 24, 2022
  • polyA Public

    Automatically Adjudicate Any And All Arbitrary Annotations, Astutely Adjoin Abutting Alignments, And Also Amputate Anything Amiss (AAAAAAAAAAAAAAAA)

    Python 3 BSD-3-Clause 0 4 1 Updated Jan 22, 2022
  • easel Public

    Sequence analysis library used by Eddy/Rivas lab code

    C 0 23 0 0 Updated Jan 21, 2022
  • fathmm Public

    Frameshift Aware Translated Hidden Markov Models

    C 0 0 0 0 Updated Jan 21, 2022
  • hmmer Public

    HMMER: biological sequence analysis using profile HMMs

    C 0 50 0 0 Updated Jan 18, 2022
  • Python 0 0 1 0 Updated Jan 14, 2022
  • shopty Public

    Simple Hyperparameter OPTimization in pYthon

    Python 0 MIT 0 0 0 Updated Jan 11, 2022

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