-
Notifications
You must be signed in to change notification settings - Fork 7
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
reading in data to SPIAT #30
Comments
Hi @cathalgking, Thank you for your interest in the tool and I apologise for the delayed response. SPIAT uses SPE object as the base object to do all operations and calculations of the images. Please try function Yuzhou |
@fuerzhou
Do you know how best to read in this data? |
Yes sorry the argument should be |
@fuerzhou
And the file I am trying to read in is a data frame which looks like: |
To use this function, you need to follow the instructions in the documentation - #' @ param format String specifying the format of the data source. Default is It seems that you put the x,y coordinates, intensities all in the same data frame. Instead, you need to specify each argument separately. |
Hi. Thanks for your work on the SPIAT package. I have data from a spatial proteomics experiment in the format shown below, which just contains x-y co-ordinates, intensity and mz values.
What function should I use to read this into a SPIAT object? I was trying one of the "format_" functions but did not have any luck. I was also trying to maybe read the data into an SPE object and convert from there to a SPIAT object?
Thanks
The text was updated successfully, but these errors were encountered: