Refactored results directories for tmp dir #135
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| name: Snakemake Unit Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - "docs/**" | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Dry Run | |
| uses: snakemake/snakemake-github-action@v1.23.0 | |
| with: | |
| directory: "." | |
| task: "run" | |
| snakefile: "workflow/Snakefile" | |
| stagein: "pip install -r requirements.txt" | |
| args: "--dry-run" | |
| # Deactivated testing in light of https://github.com/snakemake/snakemake-github-action/issues/18 | |
| # - name: Testing | |
| # uses: snakemake/snakemake-github-action@v1.23.0 | |
| # with: | |
| # directory: ".test" | |
| # snakefile: "workflow/Snakefile" | |
| # args: "--cores 1 --use-conda --conda-cleanup-pkgs cache" | |
| # stagein: "" # additional preliminary commands to run (can be multiline) |