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Updated rule information
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Graeme Ford committed Oct 9, 2023
1 parent f099062 commit c05aa45
Showing 1 changed file with 20 additions and 21 deletions.
41 changes: 20 additions & 21 deletions docs/02-workflow/02-analysis.md
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<dd>Save output to a BG-Zipped VCF file using the VCF-4.2 specification.</dd>
<dt><code>--out results/TRIM/ALL_{wildcards.location}</code> | <code>--out</code></dt>
<dd>Provide the file name and path for output creation.</dd>
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<dt><code>--pheno iid-only results/REFERENCE/cluster_$CLUSTER.txt</code> | <code>--pheno</code></dt>
<dd>Extract phenotype information from the given file by Sample ID.</dd>
<dt><code>--loop-cats $CLUSTER</code> | <code>--loop-cats</code></dt>
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