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Type design for PhasePoint and DualValue. #51

Merged
merged 56 commits into from May 20, 2019
Merged

Type design for PhasePoint and DualValue. #51

merged 56 commits into from May 20, 2019

Commits on Apr 16, 2019

  1. add Parameters to REQUIRE

    @yebai
    yebai committed Apr 16, 2019
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  2. Draft type design for PhasePoint and LogDensity.

    @yebai
    yebai committed Apr 16, 2019
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Commits on Apr 17, 2019

  1. Merge branch 'master' into hg/some-type-refactoring

    @yebai
    yebai committed Apr 17, 2019
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  2. Renamed some types.

    @yebai
    yebai committed Apr 17, 2019
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  3. Added cache for kinect energy.

    @yebai
    yebai committed Apr 17, 2019
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  4. Added some comments.

    @yebai
    yebai committed Apr 17, 2019
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  5. Merge Sampler.step into Sampler.sample.

    @yebai
    yebai committed Apr 17, 2019
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  6. Typo fix.

    @yebai
    yebai committed Apr 17, 2019
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  7. Moved step function into trajectory.

    @yebai
    yebai committed Apr 17, 2019
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  8. Fix leftover bug after merging sampler.step.

    @yebai
    yebai committed Apr 17, 2019
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Commits on Apr 18, 2019

  1. Added types for MHStats, and NUTS.

    @yebai
    yebai committed Apr 18, 2019
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  2. Relaxed type constraint for PhasePoint.

    @yebai
    yebai committed Apr 18, 2019
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  3. Add dependency on ArgCheck.

    @yebai
    yebai committed Apr 18, 2019
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  4. Switch to PhasePoint . 

    Fixed a minor bug in find_good_eps: see L250.
    @yebai
    yebai committed Apr 18, 2019
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  5. Use PhasePoint in transition.

    @yebai
    yebai committed Apr 18, 2019
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Commits on Apr 19, 2019

  1. Merge branch 'master' into hg/some-type-refactoring 

    # Conflicts:
#	REQUIRE
    @yebai
    yebai committed Apr 19, 2019
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Commits on Apr 20, 2019

  1. Merge branch 'master' into hg/some-type-refactoring

    @yebai
    yebai committed Apr 20, 2019
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  2. Create REQUIRE

    @yebai
    yebai committed Apr 20, 2019
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  3. Update Project.toml

    @yebai
    yebai committed Apr 20, 2019
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  4. Update REQUIRE

    @yebai
    yebai committed Apr 20, 2019
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  5. Update Project.toml

    @yebai
    yebai committed Apr 20, 2019
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Commits on Apr 24, 2019

  1. Merge branch 'master' into hg/some-type-refactoring 

    # Conflicts:
#	src/trajectory.jl
    @yebai
    yebai committed Apr 24, 2019
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  2. Fix dependency.

    @yebai
    yebai committed Apr 24, 2019
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  3. RM Manifest.toml file.

    @yebai
    yebai committed Apr 24, 2019
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  4. Added numerical checking to PhasePoint.

    @yebai
    yebai committed Apr 24, 2019
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  5. Typo fix.

    @yebai
    yebai committed Apr 24, 2019
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Commits on May 13, 2019

  1. Merge branch 'master' into hg/some-type-refactoring 

    # Conflicts:
#	Project.toml
#	src/metric.jl
#	src/sampler.jl
#	src/trajectory.jl
#	test/integrator.jl
    @yebai
    yebai committed May 13, 2019
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  2. Re-formatting - no functionality change.

    @yebai
    yebai committed May 13, 2019
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  3. Re-formating - no functionality change.

    @yebai
    yebai committed May 13, 2019
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  4. Removed some obsolete types.

    @yebai
    yebai committed May 13, 2019
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  5. Re-formating - no functionality change.

    @yebai
    yebai committed May 13, 2019
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  6. Remove n_valid.

    @yebai
    yebai committed May 13, 2019
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Commits on May 16, 2019

  1. Refactor leapfrog step function.

    @yebai
    yebai committed May 16, 2019
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  2. Cleanup.

    @yebai
    yebai committed May 16, 2019
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  3. More refactoring in rand momentum.

    @yebai
    yebai committed May 16, 2019
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  4. Cleanup.

    @yebai
    yebai committed May 16, 2019
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Commits on May 17, 2019

  1. Removed some comments.

    @yebai
    yebai committed May 17, 2019
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  2. More cleanup.

    @yebai
    yebai committed May 17, 2019
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  3. Refactor: use phasepoint in build_tree.

    @yebai
    yebai committed May 17, 2019
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  4. Cleanup.

    @yebai
    yebai committed May 17, 2019
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  5. Cleanup.

    @yebai
    yebai committed May 17, 2019
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  6. Rename prop to τ.

    @yebai
    yebai committed May 17, 2019
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  7. Cleanup.

    @yebai
    yebai committed May 17, 2019
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  8. Bugfix.

    @yebai
    yebai committed May 17, 2019
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Commits on May 18, 2019

  1. Fixed some type issues.

    @yebai
    yebai committed May 18, 2019
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  2. Re-formatting - no functionality change.

    @yebai
    yebai committed May 18, 2019
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  3. Minor tweak of numerical error message.

    @yebai
    yebai committed May 18, 2019
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  4. kinetic_energy ==> neg_energy

    @yebai
    yebai committed May 18, 2019
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  5. potential_energy ==> neg_energy and bugfixes.

    @yebai
    yebai committed May 18, 2019
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  6. Re-formatting - no functionality change.

    @yebai
    yebai committed May 18, 2019
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  7. Rename logπ and logκ with ℓπ, ℓκ.

    @yebai
    yebai committed May 18, 2019
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  8. Cleanup + bugfix.

    @yebai
    yebai committed May 18, 2019
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  9. ∂logπ∂θ ==> ∂ℓπ∂θ.

    @yebai
    yebai committed May 18, 2019
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  10. Cleanup - no functionality change.

    @yebai
    yebai committed May 18, 2019
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  11. Removed an obsolete comment.

    @yebai
    yebai committed May 18, 2019
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Commits on May 20, 2019

  1. test @warn in the constructor of PhasePoint

    @xukai92
    xukai92 committed May 20, 2019
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