Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CompatHelper: bump compat for AbstractMCMC to 4, (keep existing compat) #28

Merged
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
13 changes: 2 additions & 11 deletions .github/workflows/CI.yml
Expand Up @@ -20,7 +20,7 @@ jobs:
strategy:
matrix:
version:
- '1.0'
- '1.3'
- '1'
- 'nightly'
os:
Expand All @@ -43,16 +43,7 @@ jobs:
with:
version: ${{ matrix.version }}
arch: ${{ matrix.arch }}
- uses: actions/cache@v1
env:
cache-name: cache-artifacts
with:
path: ~/.julia/artifacts
key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
restore-keys: |
${{ runner.os }}-test-${{ env.cache-name }}-
${{ runner.os }}-test-
${{ runner.os }}-
- uses: julia-actions/cache@v1
- uses: julia-actions/julia-buildpkg@v1
- uses: julia-actions/julia-runtest@v1
with:
Expand Down
6 changes: 2 additions & 4 deletions .github/workflows/Docs.yml
Expand Up @@ -18,14 +18,12 @@ jobs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: julia-actions/setup-julia@latest
- uses: julia-actions/setup-julia@v1
with:
version: '1'
- name: Install dependencies
run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
- name: Build and deploy
uses: julia-actions/julia-docdeploy@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token
DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key
JULIA_DEBUG: Documenter # Print `@debug` statements (https://github.com/JuliaDocs/Documenter.jl/issues/955)
run: julia --project=docs/ docs/make.jl
6 changes: 3 additions & 3 deletions Project.toml
@@ -1,7 +1,7 @@
name = "EllipticalSliceSampling"
uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2"
authors = ["David Widmann <david.widmann@it.uu.se>"]
version = "0.4.7"
version = "0.5.0"

[deps]
AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
Expand All @@ -11,10 +11,10 @@ Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

[compat]
AbstractMCMC = "3.2"
AbstractMCMC = "3.2, 4"
ArrayInterface = "2, 3, 4, 5"
Distributions = "0.22, 0.23, 0.24, 0.25"
julia = "1"
julia = "1.3"

[extras]
Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
Expand Down
28 changes: 28 additions & 0 deletions test/simple.jl
Expand Up @@ -33,6 +33,13 @@
@test all(length(x) == 2_000 for x in samples)
@test mean(mean, samples) ≈ μ atol = 0.05
@test mean(var, samples) ≈ σ² atol = 0.05

# initial parameter
init_x = randn(5)
samples = sample(
ESSModel(prior, ℓ), ESS(), alg, 10, 5; progress=false, init_params=init_x
)
@test map(first, samples) == init_x
end

# initial parameter
Expand Down Expand Up @@ -66,6 +73,13 @@
@test all(length(x) == 2_000 for x in samples)
@test mean(mean, samples) ≈ μ atol = 0.05
@test mean(var, samples) ≈ σ² atol = 0.05

# initial parameter
init_x = randn(5)
samples = sample(
ESSModel(prior, ℓ), ESS(), alg, 10, 5; progress=false, init_params=init_x
)
@test map(first, samples) == init_x
end

# initial parameter
Expand Down Expand Up @@ -100,6 +114,13 @@
@test all(length(x) == 2_000 for x in samples)
@test mean(mean, samples) ≈ μ atol = 0.05
@test mean(var, samples) ≈ σ² atol = 0.05

# initial parameter
init_x = [randn(1) for _ in 1:5]
samples = sample(
ESSModel(prior, ℓvec), ESS(), alg, 10, 5; progress=false, init_params=init_x
)
@test map(first, samples) == init_x
end

# initial parameter
Expand Down Expand Up @@ -136,6 +157,13 @@
@test all(length(x) == 2_000 for x in samples)
@test mean(mean, samples) ≈ μ atol = 0.05
@test mean(var, samples) ≈ σ² atol = 0.05

# initial parameter
init_x = [randn(1) for _ in 1:5]
samples = sample(
ESSModel(prior, ℓvec), ESS(), alg, 10, 5; progress=false, init_params=init_x
)
@test map(first, samples) == init_x
end

# initial parameter
Expand Down