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Updated version #82

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merged 24 commits into from
Aug 22, 2020
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fe47228
switched delta and gamma to fit the @model definitions
arnaudmgh Aug 3, 2020
87002aa
added noise, added retrodicted solution plots, added data plot to sho…
arnaudmgh Aug 4, 2020
5fb6a96
re-run the notebook and edited the text
arnaudmgh Aug 4, 2020
2464774
cleaning up some install commands
arnaudmgh Aug 4, 2020
c0e6470
all runs except last cell
arnaudmgh Aug 4, 2020
9c83429
changing to a ligher gray for curves in the ODE plot
arnaudmgh Aug 4, 2020
a9b62eb
re-running the notebook
arnaudmgh Aug 4, 2020
dd10319
adding .value hint
arnaudmgh Aug 5, 2020
a29a648
adding a working version of the DDE, removing SDE for now
arnaudmgh Aug 7, 2020
01d1bb4
added DDE math equation, and explanation, comment on tilde character,…
arnaudmgh Aug 9, 2020
d56abb4
removed cell
arnaudmgh Aug 9, 2020
a9f9ba5
removed diffeqBayes section (kept a reference to it) - moved Adjoint …
arnaudmgh Aug 9, 2020
d7780fb
added section "Lokta Volterra with missing predator data"
arnaudmgh Aug 10, 2020
7e1c787
cleaning up a bit
arnaudmgh Aug 10, 2020
663ca56
Correcting chain calls syntax (see https://github.com/TuringLang/Turi…
arnaudmgh Aug 13, 2020
fa70e69
Added Inference of a Stochastic Differential Equation with the script…
arnaudmgh Aug 13, 2020
1edc9a3
Add SDE example description
Vaibhavdixit02 Aug 13, 2020
479a4c9
Add markdown file
Vaibhavdixit02 Aug 13, 2020
f1fd7d6
Update DDE history function and update markdown
Vaibhavdixit02 Aug 14, 2020
12517c0
Passed prob1 as a argument to the @model function
arnaudmgh Aug 15, 2020
5d58f67
Using remake and passing prob as argument
arnaudmgh Aug 16, 2020
048d126
removing cell with only "size(chain2, 1)"
arnaudmgh Aug 16, 2020
aaa994b
Adding logging command to have a less verbose output
arnaudmgh Aug 21, 2020
57627a8
Removed pkg activate, simplified logging syntax
arnaudmgh Aug 21, 2020
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35,514 changes: 28,511 additions & 7,003 deletions 10_diffeq.ipynb

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571 changes: 298 additions & 273 deletions Manifest.toml

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2 changes: 2 additions & 0 deletions Project.toml
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
[deps]
Bijectors = "76274a88-744f-5084-9051-94815aaf08c4"
ConjugatePriors = "1624bea9-42b1-5fc1-afd3-e96f729c8d6c"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
DiffEqBayes = "ebbdde9d-f333-5424-9be2-dbf1e9acfb5e"
DiffEqSensitivity = "41bf760c-e81c-5289-8e54-58b1f1f8abe2"
Expand All @@ -22,6 +23,7 @@ StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
Weave = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

[compat]
julia = "1"
927 changes: 660 additions & 267 deletions markdown/10_diffeq.md

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1,920 changes: 1,920 additions & 0 deletions markdown/10_diffeq_files/10_diffeq_11_0.svg
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