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@U-BDS

UAB Biological Data Science Core

README.md

Welcome! 👋

UAB Biological Data Science Core

  • The UAB Biological Data Science Core (U-BDS) is an institutional resource which aims to provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.
  • The services we offer are listed here.
  • Our training website is available here.
  • Our enquiry form is available here.

Other resources:

  • We provide bi to tri-annual workshops which cover the fundamentals of programming (R, Python, Unix, git) with current plans to provide data analysis workshops. Please contact us for further information.
  • We are active members of the nf-core community. As part of this community, we provide the following support:
    • Aid across a variety of nf-core pipelines in our weekly office hours.
    • We are the maintainers of the Cheaha profile (to enable executor mode).
    • Some of the members from U-BDS are also the developers of the nf-core/scnanoseq pipeline. The main home for this pipeline can be found at the nf-core scnanoseq repository rather than U-BDS.

Pinned Loading

  1. training_guides training_guides Public

    Compilation of training guides

    Shell 4

  2. scnanoseq scnanoseq Public

    Forked from nf-core/scnanoseq

    Single-cell/nuclei pipeline for data derived from Oxford Nanopore

    Nextflow

Repositories

Showing 10 of 15 repositories
  • bulk_RNA_seq_workshop Public

    Workshop materials for the U-BDS bulk RNA-seq lessons

    U-BDS/bulk_RNA_seq_workshop’s past year of commit activity
    R 0 GPL-3.0 2 0 0 Updated Jul 5, 2024
  • 2024-07-09-uab Public
    U-BDS/2024-07-09-uab’s past year of commit activity
    0 0 0 0 Updated Jul 5, 2024
  • scnanoseq Public Forked from nf-core/scnanoseq

    Single-cell/nuclei pipeline for data derived from Oxford Nanopore

    U-BDS/scnanoseq’s past year of commit activity
    Nextflow 0 MIT 4 0 0 Updated Jul 2, 2024
  • .github Public

    The UAB Biological Data Science Core (U-BDS) is a UAB institutional resource which aims provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.

    U-BDS/.github’s past year of commit activity
    0 1 0 0 Updated Apr 29, 2024
  • training_guides Public

    Compilation of training guides

    U-BDS/training_guides’s past year of commit activity
    Shell 4 0 1 0 Updated Apr 16, 2024
  • 2024-03-18-uab Public template Forked from carpentries/workshop-template
    U-BDS/2024-03-18-uab’s past year of commit activity
    HTML 0 513 0 0 Updated Mar 14, 2024
  • git-novice Public Forked from swcarpentry/git-novice

    Version Control with Git

    U-BDS/git-novice’s past year of commit activity
    0 913 0 0 Updated Feb 5, 2024
  • test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    U-BDS/test-datasets’s past year of commit activity
    0 MIT 326 0 0 Updated Jan 11, 2024
  • 2023-12-14-uab Public

    A repository hosting the website for UAB's Fall 2023 Software Carpentry Workshop.

    U-BDS/2023-12-14-uab’s past year of commit activity
    HTML 1 0 1 0 Updated Dec 15, 2023
  • zebrafish_telencephalon_atlas Public

    A R Shiny app of the transcriptome atlas of the maturing zebrafish telencephalon

    U-BDS/zebrafish_telencephalon_atlas’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 26, 2023
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