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Update github repository for cloning, added more minor details
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Alaa Abdellatif committed Aug 18, 2023
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# Hackathon Single Cell Notebook
Clone this repo to your computer.

```git clone https://github.com/raybueno/UCSF_HACKATHON_PRIMER.git```
```git clone git@github.com:UCSF-DSCOLAB/hackathon_primer.git```

This repo contains the Dockerfile and sample data with tutorial used to create the hackathon containers for single-cell
analysis for both python and R-studio.
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Note: The easiest way to install and use docker, is via docker desktop: https://www.docker.com/products/docker-desktop/

Be sure to select the appropriate installation for you Macbook machine.

# Running Python Container
## Pull image from Docker hub
After installing docker, pull the repository from docker hub.

```docker pull drbueno/single-cell-nb:latest ```
```docker pull drbueno/single-cell-nb:latest```

## How to Run Using Mac or Ubuntu
Change directory to ```python-container```.
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An example of working directory: `/Users/hackathon-user/UCSF_HACKATHON_PRIMER/python-container/data`

After entering the path of your local work directory, follow instructions to copy and paste link with
IP address to a web browser.
After entering the path of your local work directory, follow instructions to copy and paste link with IP address to a web browser.

### If you are using an M1/M2 Mac

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## Pull image from Docker hub
After installing docker, pull the repository from docker hub.

```docker pull drbueno/rstudio-single-cell:latest ```
```docker pull drbueno/rstudio-single-cell:latest```

## How to Run Using Mac or Ubuntu
Change directory to ```rstudio-container```.
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