Skip to content

UCSF-Wilson-Lab/TBM_classifier

Repository files navigation

This document contains all the python scripts required to run gene counts (Gene Symbol) through the two classifiers to distinguish tuberculosis meningitis (TBM) from Other neurological diseases (OND).


System requirements 

Hardware requirements
This code requires only a standard computer with enough RAM to support the in-memory operations.

Software requirements

OS Requirements
This package is supported for macOS and Linux. The package has been tested on the following systems:
macOS: Mojave (10.14.6)
Linux: Ubuntu 16.04

Python Dependencies
numpy (1.16.4)
scikit-learn (0.21.3)
pandas (0.22.0)
random (1.0.2)

The python scripts were written in Python 3.6.8.


Installation guide
Unzip this folder and install all python dependencies. 

Demo
Each folder has a README file with information on Demos and Instructions for use.

Instructions for use
Each folder has a README file with information on Demos and Instructions for use.