UCSF-Wilson-Lab/TBM_classifier
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This document contains all the python scripts required to run gene counts (Gene Symbol) through the two classifiers to distinguish tuberculosis meningitis (TBM) from Other neurological diseases (OND). System requirements Hardware requirements This code requires only a standard computer with enough RAM to support the in-memory operations. Software requirements OS Requirements This package is supported for macOS and Linux. The package has been tested on the following systems: macOS: Mojave (10.14.6) Linux: Ubuntu 16.04 Python Dependencies numpy (1.16.4) scikit-learn (0.21.3) pandas (0.22.0) random (1.0.2) The python scripts were written in Python 3.6.8. Installation guide Unzip this folder and install all python dependencies. Demo Each folder has a README file with information on Demos and Instructions for use. Instructions for use Each folder has a README file with information on Demos and Instructions for use.
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Code for TB meningitis classifier
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