20220601 – Quantitative Biology Summer School

Network-based approaches in biomedicine

The tutorial runs on Jupyter notebook.

Downloading the tutorial materials

git clone https://github.com/UEFBiomedicalInformaticsLab/NetBio_Summer_2022.git

Intalling jupyter notebook with pip

pip install notebook

Intalling jupyter notebook with anaconda

conda install -c anaconda jupyter

Install required python modules using anaconda

conda install -c anaconda -c conda-forge numpy pandas networkx powerlaw matplotlib seaborn tqdm

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
.deepnote		.deepnote
Data		Data
Extras		Extras
Figures		Figures
Outputs		Outputs
__pycache__		__pycache__
.gitignore		.gitignore
1_Network_databases.ipynb		1_Network_databases.ipynb
1s_Solutions_Network_databases.ipynb		1s_Solutions_Network_databases.ipynb
2_Network_Data_Mining.ipynb		2_Network_Data_Mining.ipynb
2s_Solutions_Network_Data_Mining.ipynb		2s_Solutions_Network_Data_Mining.ipynb
3_NDM_applications.ipynb		3_NDM_applications.ipynb
3s_Solutions_NDM_applications.ipynb		3s_Solutions_NDM_applications.ipynb
4_Final_Exercise.ipynb		4_Final_Exercise.ipynb
4s_Solutions_Final_Exercise.ipynb		4s_Solutions_Final_Exercise.ipynb
README.md		README.md
init.ipynb		init.ipynb
requirements.txt		requirements.txt
separation.py		separation.py