Particles #84
Closed
Particles #84
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…#376) * compile amg_hype and exo2nek including external libs * refactor PAPI interface to count FLOPs * changed .par keyword AMG to SEMG_AMG * set param(41-44)=0 by default irrespective of .rea * compile tools with BIGMEM by default * add counters users, users, addcol3, col2, col3, add2s2 * remove pressure solve from helm-counter * enable mxm-counter * fix restart issue with residual projection (Nek5000#361) * remove avg from tools * add .his to cpn, mvn
A minor fix to gen_rea_bottom for when the original file input was an re2 and not rea.
* import Paul's projection fix * replace realclean flag by user input * install sundials package instead of cvode * link against CVODE automatically
…#376) * compile amg_hype and exo2nek including external libs * refactor PAPI interface to count FLOPs * changed .par keyword AMG to SEMG_AMG * set param(41-44)=0 by default irrespective of .rea * compile tools with BIGMEM by default * add counters users, users, addcol3, col2, col3, add2s2 * remove pressure solve from helm-counter * enable mxm-counter * fix restart issue with residual projection (Nek5000#361) * remove avg from tools * add .his to cpn, mvn
* import Paul's projection fix * replace realclean flag by user input * install sundials package instead of cvode * link against CVODE automatically
…articles.usrp file and particles.inp file that lives in each case. The base code will mostly stay the same in core/cmt/cmtparticles.f
…reading method to -2 in particles.inp file. Also folded in some random sampling routines into cmtparticles.f so that each case doesn't need to have it in there.
…d of cmtparticles.f file
|
I will look at this today in more depth. short_tests are intended for
regression testing regardless of who is using what in the code. They must
have
…-an output file
-a set of reference data
-an entry in NekTests.py including a comparison command (usually python
reading plain text, taking arithmetic differences of numbers, and comparing
them to a specified tolerance) comparing the output file to the reference
dataset.
-an entry in travis.yml instructing Travis.cl to include the python test
whenever a regression test is ordered on Travis.
I did not know you had a short_test in mind when you submitted this. I had
intended to teach you how all this worked.
On Thu, Oct 19, 2017 at 9:45 AM David Zwick ***@***.***> wrote:
Added particles files. There are some short tests in the short tests
folder, but they are mainly meant for people using particles.
------------------------------
You can view, comment on, or merge this pull request online at:
#84
Commit Summary
- WIP: improved timers + genmap fix + defaut pressure settings (#376)
- gen_rea_full (#377)
- Neknek pnpn fix (#380)
- Revert "Merge pull request #77 from Nek5000/master"
- WIP: import latest changes (#383)
- Fix Cvode Travis tests (#385)
- Added particles file
- ortho res in esolve to make sure it is orthogonal to null space
(#384)
- Updated cmtparticles.f file
- ok now try
- Merge pull request #78 from Nek5000/master
- Removed .usrp from source ...
- WIP: improved timers + genmap fix + defaut pressure settings (#376)
- Neknek pnpn fix (#380)
- WIP: import latest changes (#383)
- Fix Cvode Travis tests (#385)
- ortho res in esolve to make sure it is orthogonal to null space
(#384)
- ok now try
- Folded in cmtparticles.f file. Now, user changes will be made in
cmtparticles.usrp file and particles.inp file that lives in each case. The
base code will mostly stay the same in core/cmt/cmtparticles.f
- Merge branch 'master' of https://github.com/dpzwick/Nek5000 into
particles
- Added particles in expansion fan case
- Added auto filter width for gaussian with warnings and checks. Set
spreading method to -2 in particles.inp file. Also folded in some random
sampling routines into cmtparticles.f so that each case doesn't need to
have it in there.
File Changes
- *M* .travis.yml
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-0> (48)
- *M* 3rd_party/cvode/install
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-1> (12)
- *M* RELEASE.md
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-2> (2)
- *M* bin/cpn <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-3>
(2)
- *M* bin/makenek
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-4> (4)
- *M* bin/mvn <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-5>
(2)
- *M* core/CTIMER
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-6> (6)
- *M* core/NEKNEK
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-7> (4)
- *M* core/PARDICT
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-8> (3)
- *A* core/cmt/CMTPART
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-9> (84)
- *M* core/cmt/artvisc.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-10> (2)
- *A* core/cmt/cmtparticles.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-11> (4604)
- *M* core/cmt/drive1_cmt.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-12> (6)
- *M* core/cmt/step.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-13> (5)
- *M* core/comm_mpi.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-14> (25)
- *M* core/conduct.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-15> (14)
- *M* core/connect2.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-16> (23)
- *M* core/drive.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-17> (23)
- *M* core/drive1.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-18> (12)
- *M* core/drive2.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-19> (85)
- *M* core/hmholtz.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-20> (16)
- *M* core/makefile.template
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-21> (3)
- *M* core/makenek.inc
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-22> (39)
- *M* core/map2.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-23> (40)
- *M* core/math.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-24> (125)
- *M* core/multimesh.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-25> (32)
- *M* core/mxm_wrapper.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-26> (24)
- *M* core/navier0.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-27> (3)
- *M* core/navier1.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-28> (12)
- *M* core/navier4.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-29> (35)
- *M* core/papi.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-30> (30)
- *M* core/plan4.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-31> (2)
- *M* core/postpro.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-32> (4)
- *M* core/prepost.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-33> (10)
- *M* core/readat_new.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-34> (8)
- *M* core/subs1.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-35> (13)
- *A* short_tests/CMT/bed_pack_init/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-36> (43)
- *A* short_tests/CMT/bed_pack_init/cmtparticles.usrp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-37> (259)
- *A* short_tests/CMT/bed_pack_init/particles.inp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-38> (39)
- *A* short_tests/CMT/bed_pack_init/partview
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-39> (67)
- *A* short_tests/CMT/bed_pack_init/uniform.box
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-40> (18)
- *A* short_tests/CMT/bed_pack_init/uniform.rea
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-41> (162)
- *A* short_tests/CMT/bed_pack_init/uniform.usr
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-42> (233)
- *A* short_tests/CMT/exp_waves/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-43> (43)
- *A* short_tests/CMT/exp_waves/TORO
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-44> (8)
- *A* short_tests/CMT/exp_waves/cmtparticles.usrp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-45> (155)
- *A* short_tests/CMT/exp_waves/particles.inp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-46> (39)
- *A* short_tests/CMT/exp_waves/partview
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-47> (67)
- *A* short_tests/CMT/exp_waves/riemann.inp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-48> (9)
- *A* short_tests/CMT/exp_waves/shocktube.box
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-49> (17)
- *A* short_tests/CMT/exp_waves/shocktube.rea
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-50> (162)
- *A* short_tests/CMT/exp_waves/shocktube.usr
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-51> (450)
- *A* short_tests/CMT/uniform_flow/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-52> (43)
- *A* short_tests/CMT/uniform_flow/cmtparticles.usrp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-53> (155)
- *A* short_tests/CMT/uniform_flow/particles.inp
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-54> (39)
- *A* short_tests/CMT/uniform_flow/partview
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-55> (67)
- *A* short_tests/CMT/uniform_flow/uniform.box
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-56> (18)
- *A* short_tests/CMT/uniform_flow/uniform.rea
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-57> (162)
- *A* short_tests/CMT/uniform_flow/uniform.usr
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-58> (232)
- *M* short_tests/NekTests.py
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-59> (8)
- *M* short_tests/axi/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-60> (2)
- *M* short_tests/conj_ht/conj_ht.par
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-61> (1)
- *M* short_tests/ethier/ethier.par
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-62> (2)
- *M* short_tests/lib/nekBinBuild.py
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-63> (24)
- *M* short_tests/lib/nekFileConfig.py
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-64> (5)
- *M* short_tests/lowMach_test/lowMach_test.par
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-65> (5)
- *M* tools/amg_hypre/README.md
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-66> (7)
- *M* tools/amg_hypre/hypre/install
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-67> (3)
- *M* tools/amg_hypre/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-68> (9)
- *D* tools/avg/avg.c
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-69> (231)
- *A* tools/exo2nek/3rd_party/install
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-70> (27)
- *M* tools/exo2nek/README.md
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-71> (23)
- *M* tools/exo2nek/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-72> (2)
- *M* tools/exo2nek/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-73> (18)
- *M* tools/genbox/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-74> (6)
- *M* tools/genbox/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-75> (2)
- *M* tools/genmap/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-76> (4)
- *M* tools/genmap/genmap.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-77> (2)
- *M* tools/genmap/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-78> (2)
- *M* tools/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-79> (14)
- *M* tools/maketools
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-80> (34)
- *M* tools/n2to3/SIZE
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-81> (2)
- *M* tools/n2to3/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-82> (2)
- *M* tools/nekmerge/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-83> (2)
- *M* tools/postnek/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-84> (2)
- *M* tools/prenek/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-85> (2)
- *M* tools/reatore2/makefile
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-86> (2)
- *M* tools/reatore2/re2torea.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-87> (2)
- *M* tools/reatore2/reatore2.f
<https://github.com/UFCCMT/Nek5000/pull/84/files#diff-88> (2)
Patch Links:
- https://github.com/UFCCMT/Nek5000/pull/84.patch
- https://github.com/UFCCMT/Nek5000/pull/84.diff
—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
<#84>, or mute the thread
<https://github.com/notifications/unsubscribe-auth/AUG6zZ4VnJYxrxOgQ_WlzL2n9wTqscysks5st1JwgaJpZM4P_QDA>
.
|
|
These are more examples for people wanting to use particles in the future.
I don't expect it to ever get folded in to UFCCMT/master, it was just a
holding place for some examples for now.
There are three cases in there. In setting up particles for Bertrand, the
uniform_flow or exp_waves case would work well as examples. Let me know if
you have any questions. I won't be there today, but will be in tomrrow.
Best wishes,
David
David Zwick
On Thu, Oct 19, 2017 at 11:04 AM, Jason Frederick Hackl <
notifications@github.com> wrote:
… I will look at this today in more depth. short_tests are intended for
regression testing regardless of who is using what in the code. They must
have
-an output file
-a set of reference data
-an entry in NekTests.py including a comparison command (usually python
reading plain text, taking arithmetic differences of numbers, and comparing
them to a specified tolerance) comparing the output file to the reference
dataset.
-an entry in travis.yml instructing Travis.cl to include the python test
whenever a regression test is ordered on Travis.
I did not know you had a short_test in mind when you submitted this. I had
intended to teach you how all this worked.
On Thu, Oct 19, 2017 at 9:45 AM David Zwick ***@***.***>
wrote:
> Added particles files. There are some short tests in the short tests
> folder, but they are mainly meant for people using particles.
> ------------------------------
> You can view, comment on, or merge this pull request online at:
>
> #84
> Commit Summary
>
> - WIP: improved timers + genmap fix + defaut pressure settings (#376)
> - gen_rea_full (#377)
> - Neknek pnpn fix (#380)
> - Revert "Merge pull request #77 from Nek5000/master"
> - WIP: import latest changes (#383)
> - Fix Cvode Travis tests (#385)
> - Added particles file
> - ortho res in esolve to make sure it is orthogonal to null space
> (#384)
> - Updated cmtparticles.f file
> - ok now try
> - Merge pull request #78 from Nek5000/master
> - Removed .usrp from source ...
> - WIP: improved timers + genmap fix + defaut pressure settings (#376)
> - Neknek pnpn fix (#380)
> - WIP: import latest changes (#383)
> - Fix Cvode Travis tests (#385)
> - ortho res in esolve to make sure it is orthogonal to null space
> (#384)
> - ok now try
> - Folded in cmtparticles.f file. Now, user changes will be made in
> cmtparticles.usrp file and particles.inp file that lives in each case.
The
> base code will mostly stay the same in core/cmt/cmtparticles.f
> - Merge branch 'master' of https://github.com/dpzwick/Nek5000 into
> particles
> - Added particles in expansion fan case
> - Added auto filter width for gaussian with warnings and checks. Set
> spreading method to -2 in particles.inp file. Also folded in some random
> sampling routines into cmtparticles.f so that each case doesn't need to
> have it in there.
>
> File Changes
>
> - *M* .travis.yml
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-0> (48)
> - *M* 3rd_party/cvode/install
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-1> (12)
> - *M* RELEASE.md
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-2> (2)
> - *M* bin/cpn <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-3>
> (2)
> - *M* bin/makenek
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-4> (4)
> - *M* bin/mvn <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-5>
> (2)
> - *M* core/CTIMER
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-6> (6)
> - *M* core/NEKNEK
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-7> (4)
> - *M* core/PARDICT
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-8> (3)
> - *A* core/cmt/CMTPART
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-9> (84)
> - *M* core/cmt/artvisc.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-10> (2)
> - *A* core/cmt/cmtparticles.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-11> (4604)
> - *M* core/cmt/drive1_cmt.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-12> (6)
> - *M* core/cmt/step.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-13> (5)
> - *M* core/comm_mpi.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-14> (25)
> - *M* core/conduct.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-15> (14)
> - *M* core/connect2.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-16> (23)
> - *M* core/drive.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-17> (23)
> - *M* core/drive1.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-18> (12)
> - *M* core/drive2.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-19> (85)
> - *M* core/hmholtz.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-20> (16)
> - *M* core/makefile.template
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-21> (3)
> - *M* core/makenek.inc
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-22> (39)
> - *M* core/map2.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-23> (40)
> - *M* core/math.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-24> (125)
> - *M* core/multimesh.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-25> (32)
> - *M* core/mxm_wrapper.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-26> (24)
> - *M* core/navier0.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-27> (3)
> - *M* core/navier1.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-28> (12)
> - *M* core/navier4.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-29> (35)
> - *M* core/papi.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-30> (30)
> - *M* core/plan4.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-31> (2)
> - *M* core/postpro.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-32> (4)
> - *M* core/prepost.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-33> (10)
> - *M* core/readat_new.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-34> (8)
> - *M* core/subs1.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-35> (13)
> - *A* short_tests/CMT/bed_pack_init/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-36> (43)
> - *A* short_tests/CMT/bed_pack_init/cmtparticles.usrp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-37> (259)
> - *A* short_tests/CMT/bed_pack_init/particles.inp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-38> (39)
> - *A* short_tests/CMT/bed_pack_init/partview
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-39> (67)
> - *A* short_tests/CMT/bed_pack_init/uniform.box
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-40> (18)
> - *A* short_tests/CMT/bed_pack_init/uniform.rea
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-41> (162)
> - *A* short_tests/CMT/bed_pack_init/uniform.usr
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-42> (233)
> - *A* short_tests/CMT/exp_waves/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-43> (43)
> - *A* short_tests/CMT/exp_waves/TORO
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-44> (8)
> - *A* short_tests/CMT/exp_waves/cmtparticles.usrp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-45> (155)
> - *A* short_tests/CMT/exp_waves/particles.inp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-46> (39)
> - *A* short_tests/CMT/exp_waves/partview
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-47> (67)
> - *A* short_tests/CMT/exp_waves/riemann.inp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-48> (9)
> - *A* short_tests/CMT/exp_waves/shocktube.box
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-49> (17)
> - *A* short_tests/CMT/exp_waves/shocktube.rea
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-50> (162)
> - *A* short_tests/CMT/exp_waves/shocktube.usr
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-51> (450)
> - *A* short_tests/CMT/uniform_flow/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-52> (43)
> - *A* short_tests/CMT/uniform_flow/cmtparticles.usrp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-53> (155)
> - *A* short_tests/CMT/uniform_flow/particles.inp
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-54> (39)
> - *A* short_tests/CMT/uniform_flow/partview
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-55> (67)
> - *A* short_tests/CMT/uniform_flow/uniform.box
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-56> (18)
> - *A* short_tests/CMT/uniform_flow/uniform.rea
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-57> (162)
> - *A* short_tests/CMT/uniform_flow/uniform.usr
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-58> (232)
> - *M* short_tests/NekTests.py
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-59> (8)
> - *M* short_tests/axi/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-60> (2)
> - *M* short_tests/conj_ht/conj_ht.par
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-61> (1)
> - *M* short_tests/ethier/ethier.par
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-62> (2)
> - *M* short_tests/lib/nekBinBuild.py
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-63> (24)
> - *M* short_tests/lib/nekFileConfig.py
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-64> (5)
> - *M* short_tests/lowMach_test/lowMach_test.par
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-65> (5)
> - *M* tools/amg_hypre/README.md
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-66> (7)
> - *M* tools/amg_hypre/hypre/install
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-67> (3)
> - *M* tools/amg_hypre/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-68> (9)
> - *D* tools/avg/avg.c
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-69> (231)
> - *A* tools/exo2nek/3rd_party/install
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-70> (27)
> - *M* tools/exo2nek/README.md
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-71> (23)
> - *M* tools/exo2nek/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-72> (2)
> - *M* tools/exo2nek/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-73> (18)
> - *M* tools/genbox/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-74> (6)
> - *M* tools/genbox/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-75> (2)
> - *M* tools/genmap/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-76> (4)
> - *M* tools/genmap/genmap.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-77> (2)
> - *M* tools/genmap/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-78> (2)
> - *M* tools/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-79> (14)
> - *M* tools/maketools
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-80> (34)
> - *M* tools/n2to3/SIZE
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-81> (2)
> - *M* tools/n2to3/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-82> (2)
> - *M* tools/nekmerge/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-83> (2)
> - *M* tools/postnek/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-84> (2)
> - *M* tools/prenek/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-85> (2)
> - *M* tools/reatore2/makefile
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-86> (2)
> - *M* tools/reatore2/re2torea.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-87> (2)
> - *M* tools/reatore2/reatore2.f
> <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-88> (2)
>
> Patch Links:
>
> - https://github.com/UFCCMT/Nek5000/pull/84.patch
> - https://github.com/UFCCMT/Nek5000/pull/84.diff
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <#84>, or mute the thread
> <https://github.com/notifications/unsubscribe-auth/AUG6zZ4VnJYxrxOgQ_
WlzL2n9wTqscysks5st1JwgaJpZM4P_QDA>
> .
>
—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub
<#84 (comment)>, or mute
the thread
<https://github.com/notifications/unsubscribe-auth/AUG7TLry_yS8gmUllj2sRxqDuRnigaqfks5st2UVgaJpZM4P_QDA>
.
|
|
What I think we will do is have you write an actual short_test and also
move the rest of your examples into a dedicated branch of UFCCMT/NekExamples
Argonne is making me add my stuff to NekTests.py in NekExamples, but I
think we can relax that requirement for UFCCMT usage. I do believe that
short_tests should serve a very specific purpose beyond tutorial use (that
is, regression testing), and you do need one
On Thu, Oct 19, 2017 at 11:11 AM David Zwick <notifications@github.com>
wrote:
… These are more examples for people wanting to use particles in the future.
I don't expect it to ever get folded in to UFCCMT/master, it was just a
holding place for some examples for now.
There are three cases in there. In setting up particles for Bertrand, the
uniform_flow or exp_waves case would work well as examples. Let me know if
you have any questions. I won't be there today, but will be in tomrrow.
Best wishes,
David
David Zwick
On Thu, Oct 19, 2017 at 11:04 AM, Jason Frederick Hackl <
***@***.***> wrote:
> I will look at this today in more depth. short_tests are intended for
> regression testing regardless of who is using what in the code. They must
> have
>
> -an output file
> -a set of reference data
> -an entry in NekTests.py including a comparison command (usually python
> reading plain text, taking arithmetic differences of numbers, and
comparing
> them to a specified tolerance) comparing the output file to the reference
> dataset.
> -an entry in travis.yml instructing Travis.cl to include the python test
> whenever a regression test is ordered on Travis.
>
> I did not know you had a short_test in mind when you submitted this. I
had
> intended to teach you how all this worked.
>
> On Thu, Oct 19, 2017 at 9:45 AM David Zwick ***@***.***>
> wrote:
>
> > Added particles files. There are some short tests in the short tests
> > folder, but they are mainly meant for people using particles.
> > ------------------------------
> > You can view, comment on, or merge this pull request online at:
> >
> > #84
> > Commit Summary
> >
> > - WIP: improved timers + genmap fix + defaut pressure settings (#376)
> > - gen_rea_full (#377)
> > - Neknek pnpn fix (#380)
> > - Revert "Merge pull request #77 from Nek5000/master"
> > - WIP: import latest changes (#383)
> > - Fix Cvode Travis tests (#385)
> > - Added particles file
> > - ortho res in esolve to make sure it is orthogonal to null space
> > (#384)
> > - Updated cmtparticles.f file
> > - ok now try
> > - Merge pull request #78 from Nek5000/master
> > - Removed .usrp from source ...
> > - WIP: improved timers + genmap fix + defaut pressure settings (#376)
> > - Neknek pnpn fix (#380)
> > - WIP: import latest changes (#383)
> > - Fix Cvode Travis tests (#385)
> > - ortho res in esolve to make sure it is orthogonal to null space
> > (#384)
> > - ok now try
> > - Folded in cmtparticles.f file. Now, user changes will be made in
> > cmtparticles.usrp file and particles.inp file that lives in each case.
> The
> > base code will mostly stay the same in core/cmt/cmtparticles.f
> > - Merge branch 'master' of https://github.com/dpzwick/Nek5000 into
> > particles
> > - Added particles in expansion fan case
> > - Added auto filter width for gaussian with warnings and checks. Set
> > spreading method to -2 in particles.inp file. Also folded in some
random
> > sampling routines into cmtparticles.f so that each case doesn't need to
> > have it in there.
> >
> > File Changes
> >
> > - *M* .travis.yml
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-0> (48)
> > - *M* 3rd_party/cvode/install
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-1> (12)
> > - *M* RELEASE.md
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-2> (2)
> > - *M* bin/cpn <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-3>
> > (2)
> > - *M* bin/makenek
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-4> (4)
> > - *M* bin/mvn <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-5>
> > (2)
> > - *M* core/CTIMER
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-6> (6)
> > - *M* core/NEKNEK
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-7> (4)
> > - *M* core/PARDICT
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-8> (3)
> > - *A* core/cmt/CMTPART
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-9> (84)
> > - *M* core/cmt/artvisc.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-10> (2)
> > - *A* core/cmt/cmtparticles.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-11> (4604)
> > - *M* core/cmt/drive1_cmt.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-12> (6)
> > - *M* core/cmt/step.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-13> (5)
> > - *M* core/comm_mpi.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-14> (25)
> > - *M* core/conduct.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-15> (14)
> > - *M* core/connect2.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-16> (23)
> > - *M* core/drive.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-17> (23)
> > - *M* core/drive1.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-18> (12)
> > - *M* core/drive2.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-19> (85)
> > - *M* core/hmholtz.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-20> (16)
> > - *M* core/makefile.template
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-21> (3)
> > - *M* core/makenek.inc
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-22> (39)
> > - *M* core/map2.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-23> (40)
> > - *M* core/math.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-24> (125)
> > - *M* core/multimesh.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-25> (32)
> > - *M* core/mxm_wrapper.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-26> (24)
> > - *M* core/navier0.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-27> (3)
> > - *M* core/navier1.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-28> (12)
> > - *M* core/navier4.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-29> (35)
> > - *M* core/papi.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-30> (30)
> > - *M* core/plan4.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-31> (2)
> > - *M* core/postpro.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-32> (4)
> > - *M* core/prepost.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-33> (10)
> > - *M* core/readat_new.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-34> (8)
> > - *M* core/subs1.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-35> (13)
> > - *A* short_tests/CMT/bed_pack_init/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-36> (43)
> > - *A* short_tests/CMT/bed_pack_init/cmtparticles.usrp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-37> (259)
> > - *A* short_tests/CMT/bed_pack_init/particles.inp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-38> (39)
> > - *A* short_tests/CMT/bed_pack_init/partview
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-39> (67)
> > - *A* short_tests/CMT/bed_pack_init/uniform.box
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-40> (18)
> > - *A* short_tests/CMT/bed_pack_init/uniform.rea
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-41> (162)
> > - *A* short_tests/CMT/bed_pack_init/uniform.usr
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-42> (233)
> > - *A* short_tests/CMT/exp_waves/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-43> (43)
> > - *A* short_tests/CMT/exp_waves/TORO
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-44> (8)
> > - *A* short_tests/CMT/exp_waves/cmtparticles.usrp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-45> (155)
> > - *A* short_tests/CMT/exp_waves/particles.inp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-46> (39)
> > - *A* short_tests/CMT/exp_waves/partview
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-47> (67)
> > - *A* short_tests/CMT/exp_waves/riemann.inp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-48> (9)
> > - *A* short_tests/CMT/exp_waves/shocktube.box
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-49> (17)
> > - *A* short_tests/CMT/exp_waves/shocktube.rea
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-50> (162)
> > - *A* short_tests/CMT/exp_waves/shocktube.usr
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-51> (450)
> > - *A* short_tests/CMT/uniform_flow/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-52> (43)
> > - *A* short_tests/CMT/uniform_flow/cmtparticles.usrp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-53> (155)
> > - *A* short_tests/CMT/uniform_flow/particles.inp
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-54> (39)
> > - *A* short_tests/CMT/uniform_flow/partview
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-55> (67)
> > - *A* short_tests/CMT/uniform_flow/uniform.box
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-56> (18)
> > - *A* short_tests/CMT/uniform_flow/uniform.rea
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-57> (162)
> > - *A* short_tests/CMT/uniform_flow/uniform.usr
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-58> (232)
> > - *M* short_tests/NekTests.py
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-59> (8)
> > - *M* short_tests/axi/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-60> (2)
> > - *M* short_tests/conj_ht/conj_ht.par
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-61> (1)
> > - *M* short_tests/ethier/ethier.par
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-62> (2)
> > - *M* short_tests/lib/nekBinBuild.py
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-63> (24)
> > - *M* short_tests/lib/nekFileConfig.py
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-64> (5)
> > - *M* short_tests/lowMach_test/lowMach_test.par
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-65> (5)
> > - *M* tools/amg_hypre/README.md
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-66> (7)
> > - *M* tools/amg_hypre/hypre/install
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-67> (3)
> > - *M* tools/amg_hypre/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-68> (9)
> > - *D* tools/avg/avg.c
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-69> (231)
> > - *A* tools/exo2nek/3rd_party/install
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-70> (27)
> > - *M* tools/exo2nek/README.md
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-71> (23)
> > - *M* tools/exo2nek/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-72> (2)
> > - *M* tools/exo2nek/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-73> (18)
> > - *M* tools/genbox/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-74> (6)
> > - *M* tools/genbox/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-75> (2)
> > - *M* tools/genmap/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-76> (4)
> > - *M* tools/genmap/genmap.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-77> (2)
> > - *M* tools/genmap/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-78> (2)
> > - *M* tools/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-79> (14)
> > - *M* tools/maketools
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-80> (34)
> > - *M* tools/n2to3/SIZE
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-81> (2)
> > - *M* tools/n2to3/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-82> (2)
> > - *M* tools/nekmerge/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-83> (2)
> > - *M* tools/postnek/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-84> (2)
> > - *M* tools/prenek/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-85> (2)
> > - *M* tools/reatore2/makefile
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-86> (2)
> > - *M* tools/reatore2/re2torea.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-87> (2)
> > - *M* tools/reatore2/reatore2.f
> > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-88> (2)
> >
> > Patch Links:
> >
> > - https://github.com/UFCCMT/Nek5000/pull/84.patch
> > - https://github.com/UFCCMT/Nek5000/pull/84.diff
> >
> > —
> > You are receiving this because you are subscribed to this thread.
> > Reply to this email directly, view it on GitHub
> > <#84>, or mute the thread
> > <https://github.com/notifications/unsubscribe-auth/AUG6zZ4VnJYxrxOgQ_
> WlzL2n9wTqscysks5st1JwgaJpZM4P_QDA>
> > .
> >
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <#84 (comment)>, or
mute
> the thread
> <
https://github.com/notifications/unsubscribe-auth/AUG7TLry_yS8gmUllj2sRxqDuRnigaqfks5st2UVgaJpZM4P_QDA
>
> .
>
—
You are receiving this because you commented.
Reply to this email directly, view it on GitHub
<#84 (comment)>, or mute
the thread
<https://github.com/notifications/unsubscribe-auth/AUG6zZj1So69sfufcXTHNVDoFnivx2Y9ks5st2argaJpZM4P_QDA>
.
|
|
I will cancel the pull request and remove the examples and add that to the
UFCCMT/NekExamples folder. Thank you.
David Zwick
On Thu, Oct 19, 2017 at 11:45 AM, Jason Frederick Hackl <
notifications@github.com> wrote:
… What I think we will do is have you write an actual short_test and also
move the rest of your examples into a dedicated branch of
UFCCMT/NekExamples
Argonne is making me add my stuff to NekTests.py in NekExamples, but I
think we can relax that requirement for UFCCMT usage. I do believe that
short_tests should serve a very specific purpose beyond tutorial use (that
is, regression testing), and you do need one
On Thu, Oct 19, 2017 at 11:11 AM David Zwick ***@***.***>
wrote:
> These are more examples for people wanting to use particles in the
future.
> I don't expect it to ever get folded in to UFCCMT/master, it was just a
> holding place for some examples for now.
>
> There are three cases in there. In setting up particles for Bertrand, the
> uniform_flow or exp_waves case would work well as examples. Let me know
if
> you have any questions. I won't be there today, but will be in tomrrow.
>
> Best wishes,
> David
>
> David Zwick
>
> On Thu, Oct 19, 2017 at 11:04 AM, Jason Frederick Hackl <
> ***@***.***> wrote:
>
> > I will look at this today in more depth. short_tests are intended for
> > regression testing regardless of who is using what in the code. They
must
> > have
> >
> > -an output file
> > -a set of reference data
> > -an entry in NekTests.py including a comparison command (usually python
> > reading plain text, taking arithmetic differences of numbers, and
> comparing
> > them to a specified tolerance) comparing the output file to the
reference
> > dataset.
> > -an entry in travis.yml instructing Travis.cl to include the python
test
> > whenever a regression test is ordered on Travis.
> >
> > I did not know you had a short_test in mind when you submitted this. I
> had
> > intended to teach you how all this worked.
> >
> > On Thu, Oct 19, 2017 at 9:45 AM David Zwick ***@***.***>
> > wrote:
> >
> > > Added particles files. There are some short tests in the short tests
> > > folder, but they are mainly meant for people using particles.
> > > ------------------------------
> > > You can view, comment on, or merge this pull request online at:
> > >
> > > #84
> > > Commit Summary
> > >
> > > - WIP: improved timers + genmap fix + defaut pressure settings (#376)
> > > - gen_rea_full (#377)
> > > - Neknek pnpn fix (#380)
> > > - Revert "Merge pull request #77 from Nek5000/master"
> > > - WIP: import latest changes (#383)
> > > - Fix Cvode Travis tests (#385)
> > > - Added particles file
> > > - ortho res in esolve to make sure it is orthogonal to null space
> > > (#384)
> > > - Updated cmtparticles.f file
> > > - ok now try
> > > - Merge pull request #78 from Nek5000/master
> > > - Removed .usrp from source ...
> > > - WIP: improved timers + genmap fix + defaut pressure settings (#376)
> > > - Neknek pnpn fix (#380)
> > > - WIP: import latest changes (#383)
> > > - Fix Cvode Travis tests (#385)
> > > - ortho res in esolve to make sure it is orthogonal to null space
> > > (#384)
> > > - ok now try
> > > - Folded in cmtparticles.f file. Now, user changes will be made in
> > > cmtparticles.usrp file and particles.inp file that lives in each
case.
> > The
> > > base code will mostly stay the same in core/cmt/cmtparticles.f
> > > - Merge branch 'master' of https://github.com/dpzwick/Nek5000 into
> > > particles
> > > - Added particles in expansion fan case
> > > - Added auto filter width for gaussian with warnings and checks. Set
> > > spreading method to -2 in particles.inp file. Also folded in some
> random
> > > sampling routines into cmtparticles.f so that each case doesn't need
to
> > > have it in there.
> > >
> > > File Changes
> > >
> > > - *M* .travis.yml
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-0> (48)
> > > - *M* 3rd_party/cvode/install
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-1> (12)
> > > - *M* RELEASE.md
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-2> (2)
> > > - *M* bin/cpn <https://github.com/UFCCMT/
Nek5000#84/files#diff-3>
> > > (2)
> > > - *M* bin/makenek
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-4> (4)
> > > - *M* bin/mvn <https://github.com/UFCCMT/
Nek5000#84/files#diff-5>
> > > (2)
> > > - *M* core/CTIMER
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-6> (6)
> > > - *M* core/NEKNEK
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-7> (4)
> > > - *M* core/PARDICT
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-8> (3)
> > > - *A* core/cmt/CMTPART
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-9> (84)
> > > - *M* core/cmt/artvisc.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-10> (2)
> > > - *A* core/cmt/cmtparticles.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-11> (4604)
> > > - *M* core/cmt/drive1_cmt.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-12> (6)
> > > - *M* core/cmt/step.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-13> (5)
> > > - *M* core/comm_mpi.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-14> (25)
> > > - *M* core/conduct.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-15> (14)
> > > - *M* core/connect2.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-16> (23)
> > > - *M* core/drive.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-17> (23)
> > > - *M* core/drive1.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-18> (12)
> > > - *M* core/drive2.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-19> (85)
> > > - *M* core/hmholtz.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-20> (16)
> > > - *M* core/makefile.template
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-21> (3)
> > > - *M* core/makenek.inc
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-22> (39)
> > > - *M* core/map2.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-23> (40)
> > > - *M* core/math.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-24> (125)
> > > - *M* core/multimesh.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-25> (32)
> > > - *M* core/mxm_wrapper.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-26> (24)
> > > - *M* core/navier0.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-27> (3)
> > > - *M* core/navier1.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-28> (12)
> > > - *M* core/navier4.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-29> (35)
> > > - *M* core/papi.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-30> (30)
> > > - *M* core/plan4.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-31> (2)
> > > - *M* core/postpro.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-32> (4)
> > > - *M* core/prepost.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-33> (10)
> > > - *M* core/readat_new.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-34> (8)
> > > - *M* core/subs1.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-35> (13)
> > > - *A* short_tests/CMT/bed_pack_init/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-36> (43)
> > > - *A* short_tests/CMT/bed_pack_init/cmtparticles.usrp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-37> (259)
> > > - *A* short_tests/CMT/bed_pack_init/particles.inp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-38> (39)
> > > - *A* short_tests/CMT/bed_pack_init/partview
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-39> (67)
> > > - *A* short_tests/CMT/bed_pack_init/uniform.box
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-40> (18)
> > > - *A* short_tests/CMT/bed_pack_init/uniform.rea
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-41> (162)
> > > - *A* short_tests/CMT/bed_pack_init/uniform.usr
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-42> (233)
> > > - *A* short_tests/CMT/exp_waves/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-43> (43)
> > > - *A* short_tests/CMT/exp_waves/TORO
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-44> (8)
> > > - *A* short_tests/CMT/exp_waves/cmtparticles.usrp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-45> (155)
> > > - *A* short_tests/CMT/exp_waves/particles.inp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-46> (39)
> > > - *A* short_tests/CMT/exp_waves/partview
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-47> (67)
> > > - *A* short_tests/CMT/exp_waves/riemann.inp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-48> (9)
> > > - *A* short_tests/CMT/exp_waves/shocktube.box
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-49> (17)
> > > - *A* short_tests/CMT/exp_waves/shocktube.rea
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-50> (162)
> > > - *A* short_tests/CMT/exp_waves/shocktube.usr
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-51> (450)
> > > - *A* short_tests/CMT/uniform_flow/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-52> (43)
> > > - *A* short_tests/CMT/uniform_flow/cmtparticles.usrp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-53> (155)
> > > - *A* short_tests/CMT/uniform_flow/particles.inp
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-54> (39)
> > > - *A* short_tests/CMT/uniform_flow/partview
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-55> (67)
> > > - *A* short_tests/CMT/uniform_flow/uniform.box
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-56> (18)
> > > - *A* short_tests/CMT/uniform_flow/uniform.rea
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-57> (162)
> > > - *A* short_tests/CMT/uniform_flow/uniform.usr
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-58> (232)
> > > - *M* short_tests/NekTests.py
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-59> (8)
> > > - *M* short_tests/axi/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-60> (2)
> > > - *M* short_tests/conj_ht/conj_ht.par
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-61> (1)
> > > - *M* short_tests/ethier/ethier.par
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-62> (2)
> > > - *M* short_tests/lib/nekBinBuild.py
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-63> (24)
> > > - *M* short_tests/lib/nekFileConfig.py
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-64> (5)
> > > - *M* short_tests/lowMach_test/lowMach_test.par
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-65> (5)
> > > - *M* tools/amg_hypre/README.md
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-66> (7)
> > > - *M* tools/amg_hypre/hypre/install
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-67> (3)
> > > - *M* tools/amg_hypre/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-68> (9)
> > > - *D* tools/avg/avg.c
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-69> (231)
> > > - *A* tools/exo2nek/3rd_party/install
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-70> (27)
> > > - *M* tools/exo2nek/README.md
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-71> (23)
> > > - *M* tools/exo2nek/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-72> (2)
> > > - *M* tools/exo2nek/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-73> (18)
> > > - *M* tools/genbox/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-74> (6)
> > > - *M* tools/genbox/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-75> (2)
> > > - *M* tools/genmap/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-76> (4)
> > > - *M* tools/genmap/genmap.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-77> (2)
> > > - *M* tools/genmap/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-78> (2)
> > > - *M* tools/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-79> (14)
> > > - *M* tools/maketools
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-80> (34)
> > > - *M* tools/n2to3/SIZE
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-81> (2)
> > > - *M* tools/n2to3/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-82> (2)
> > > - *M* tools/nekmerge/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-83> (2)
> > > - *M* tools/postnek/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-84> (2)
> > > - *M* tools/prenek/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-85> (2)
> > > - *M* tools/reatore2/makefile
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-86> (2)
> > > - *M* tools/reatore2/re2torea.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-87> (2)
> > > - *M* tools/reatore2/reatore2.f
> > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-88> (2)
> > >
> > > Patch Links:
> > >
> > > - https://github.com/UFCCMT/Nek5000/pull/84.patch
> > > - https://github.com/UFCCMT/Nek5000/pull/84.diff
> > >
> > > —
> > > You are receiving this because you are subscribed to this thread.
> > > Reply to this email directly, view it on GitHub
> > > <#84>, or mute the thread
> > > <https://github.com/notifications/unsubscribe-
auth/AUG6zZ4VnJYxrxOgQ_
> > WlzL2n9wTqscysks5st1JwgaJpZM4P_QDA>
> > > .
> > >
> >
> > —
> > You are receiving this because you authored the thread.
> > Reply to this email directly, view it on GitHub
> > <#84 (comment)>, or
> mute
> > the thread
> > <
> https://github.com/notifications/unsubscribe-auth/AUG7TLry_
yS8gmUllj2sRxqDuRnigaqfks5st2UVgaJpZM4P_QDA
> >
> > .
> >
>
> —
> You are receiving this because you commented.
>
>
> Reply to this email directly, view it on GitHub
> <#84 (comment)>, or
mute
> the thread
> <https://github.com/notifications/unsubscribe-auth/
AUG6zZj1So69sfufcXTHNVDoFnivx2Y9ks5st2argaJpZM4P_QDA>
> .
>
—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub
<#84 (comment)>, or mute
the thread
<https://github.com/notifications/unsubscribe-auth/AUG7TOOyuWeb9bTznS-SyclZv31K8f6Gks5st26tgaJpZM4P_QDA>
.
|
|
You can do that. You should know that I am still working on the last major
hurdle of getting CMT-nek's shock waves into NekExamples. Once that is done
we will want to have your particle stuff in an up-to-date branch of
UFCCMT/NekExamples.
Great work David. It may have to wait until tomorrow morning for me to
catch up.
On Thu, Oct 19, 2017 at 12:46 PM, David Zwick <notifications@github.com>
wrote:
… I will cancel the pull request and remove the examples and add that to the
UFCCMT/NekExamples folder. Thank you.
David Zwick
On Thu, Oct 19, 2017 at 11:45 AM, Jason Frederick Hackl <
***@***.***> wrote:
> What I think we will do is have you write an actual short_test and also
> move the rest of your examples into a dedicated branch of
> UFCCMT/NekExamples
>
>
> Argonne is making me add my stuff to NekTests.py in NekExamples, but I
> think we can relax that requirement for UFCCMT usage. I do believe that
> short_tests should serve a very specific purpose beyond tutorial use
(that
> is, regression testing), and you do need one
> On Thu, Oct 19, 2017 at 11:11 AM David Zwick ***@***.***>
>
> wrote:
>
> > These are more examples for people wanting to use particles in the
> future.
> > I don't expect it to ever get folded in to UFCCMT/master, it was just a
> > holding place for some examples for now.
> >
> > There are three cases in there. In setting up particles for Bertrand,
the
> > uniform_flow or exp_waves case would work well as examples. Let me know
> if
> > you have any questions. I won't be there today, but will be in tomrrow.
> >
> > Best wishes,
> > David
> >
> > David Zwick
> >
> > On Thu, Oct 19, 2017 at 11:04 AM, Jason Frederick Hackl <
> > ***@***.***> wrote:
> >
> > > I will look at this today in more depth. short_tests are intended for
> > > regression testing regardless of who is using what in the code. They
> must
> > > have
> > >
> > > -an output file
> > > -a set of reference data
> > > -an entry in NekTests.py including a comparison command (usually
python
> > > reading plain text, taking arithmetic differences of numbers, and
> > comparing
> > > them to a specified tolerance) comparing the output file to the
> reference
> > > dataset.
> > > -an entry in travis.yml instructing Travis.cl to include the python
> test
> > > whenever a regression test is ordered on Travis.
> > >
> > > I did not know you had a short_test in mind when you submitted this.
I
> > had
> > > intended to teach you how all this worked.
> > >
> > > On Thu, Oct 19, 2017 at 9:45 AM David Zwick <
***@***.***>
> > > wrote:
> > >
> > > > Added particles files. There are some short tests in the short
tests
> > > > folder, but they are mainly meant for people using particles.
> > > > ------------------------------
> > > > You can view, comment on, or merge this pull request online at:
> > > >
> > > > #84
> > > > Commit Summary
> > > >
> > > > - WIP: improved timers + genmap fix + defaut pressure settings
(#376)
> > > > - gen_rea_full (#377)
> > > > - Neknek pnpn fix (#380)
> > > > - Revert "Merge pull request #77 from Nek5000/master"
> > > > - WIP: import latest changes (#383)
> > > > - Fix Cvode Travis tests (#385)
> > > > - Added particles file
> > > > - ortho res in esolve to make sure it is orthogonal to null space
> > > > (#384)
> > > > - Updated cmtparticles.f file
> > > > - ok now try
> > > > - Merge pull request #78 from Nek5000/master
> > > > - Removed .usrp from source ...
> > > > - WIP: improved timers + genmap fix + defaut pressure settings
(#376)
> > > > - Neknek pnpn fix (#380)
> > > > - WIP: import latest changes (#383)
> > > > - Fix Cvode Travis tests (#385)
> > > > - ortho res in esolve to make sure it is orthogonal to null space
> > > > (#384)
> > > > - ok now try
> > > > - Folded in cmtparticles.f file. Now, user changes will be made in
> > > > cmtparticles.usrp file and particles.inp file that lives in each
> case.
> > > The
> > > > base code will mostly stay the same in core/cmt/cmtparticles.f
> > > > - Merge branch 'master' of https://github.com/dpzwick/Nek5000 into
> > > > particles
> > > > - Added particles in expansion fan case
> > > > - Added auto filter width for gaussian with warnings and checks.
Set
> > > > spreading method to -2 in particles.inp file. Also folded in some
> > random
> > > > sampling routines into cmtparticles.f so that each case doesn't
need
> to
> > > > have it in there.
> > > >
> > > > File Changes
> > > >
> > > > - *M* .travis.yml
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-0> (48)
> > > > - *M* 3rd_party/cvode/install
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-1> (12)
> > > > - *M* RELEASE.md
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-2> (2)
> > > > - *M* bin/cpn <https://github.com/UFCCMT/
> Nek5000#84/files#diff-3>
> > > > (2)
> > > > - *M* bin/makenek
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-4> (4)
> > > > - *M* bin/mvn <https://github.com/UFCCMT/
> Nek5000#84/files#diff-5>
> > > > (2)
> > > > - *M* core/CTIMER
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-6> (6)
> > > > - *M* core/NEKNEK
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-7> (4)
> > > > - *M* core/PARDICT
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-8> (3)
> > > > - *A* core/cmt/CMTPART
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-9> (84)
> > > > - *M* core/cmt/artvisc.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-10> (2)
> > > > - *A* core/cmt/cmtparticles.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-11> (4604)
> > > > - *M* core/cmt/drive1_cmt.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-12> (6)
> > > > - *M* core/cmt/step.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-13> (5)
> > > > - *M* core/comm_mpi.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-14> (25)
> > > > - *M* core/conduct.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-15> (14)
> > > > - *M* core/connect2.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-16> (23)
> > > > - *M* core/drive.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-17> (23)
> > > > - *M* core/drive1.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-18> (12)
> > > > - *M* core/drive2.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-19> (85)
> > > > - *M* core/hmholtz.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-20> (16)
> > > > - *M* core/makefile.template
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-21> (3)
> > > > - *M* core/makenek.inc
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-22> (39)
> > > > - *M* core/map2.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-23> (40)
> > > > - *M* core/math.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-24> (125)
> > > > - *M* core/multimesh.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-25> (32)
> > > > - *M* core/mxm_wrapper.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-26> (24)
> > > > - *M* core/navier0.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-27> (3)
> > > > - *M* core/navier1.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-28> (12)
> > > > - *M* core/navier4.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-29> (35)
> > > > - *M* core/papi.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-30> (30)
> > > > - *M* core/plan4.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-31> (2)
> > > > - *M* core/postpro.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-32> (4)
> > > > - *M* core/prepost.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-33> (10)
> > > > - *M* core/readat_new.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-34> (8)
> > > > - *M* core/subs1.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-35> (13)
> > > > - *A* short_tests/CMT/bed_pack_init/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-36> (43)
> > > > - *A* short_tests/CMT/bed_pack_init/cmtparticles.usrp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-37> (259)
> > > > - *A* short_tests/CMT/bed_pack_init/particles.inp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-38> (39)
> > > > - *A* short_tests/CMT/bed_pack_init/partview
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-39> (67)
> > > > - *A* short_tests/CMT/bed_pack_init/uniform.box
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-40> (18)
> > > > - *A* short_tests/CMT/bed_pack_init/uniform.rea
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-41> (162)
> > > > - *A* short_tests/CMT/bed_pack_init/uniform.usr
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-42> (233)
> > > > - *A* short_tests/CMT/exp_waves/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-43> (43)
> > > > - *A* short_tests/CMT/exp_waves/TORO
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-44> (8)
> > > > - *A* short_tests/CMT/exp_waves/cmtparticles.usrp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-45> (155)
> > > > - *A* short_tests/CMT/exp_waves/particles.inp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-46> (39)
> > > > - *A* short_tests/CMT/exp_waves/partview
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-47> (67)
> > > > - *A* short_tests/CMT/exp_waves/riemann.inp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-48> (9)
> > > > - *A* short_tests/CMT/exp_waves/shocktube.box
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-49> (17)
> > > > - *A* short_tests/CMT/exp_waves/shocktube.rea
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-50> (162)
> > > > - *A* short_tests/CMT/exp_waves/shocktube.usr
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-51> (450)
> > > > - *A* short_tests/CMT/uniform_flow/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-52> (43)
> > > > - *A* short_tests/CMT/uniform_flow/cmtparticles.usrp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-53> (155)
> > > > - *A* short_tests/CMT/uniform_flow/particles.inp
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-54> (39)
> > > > - *A* short_tests/CMT/uniform_flow/partview
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-55> (67)
> > > > - *A* short_tests/CMT/uniform_flow/uniform.box
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-56> (18)
> > > > - *A* short_tests/CMT/uniform_flow/uniform.rea
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-57> (162)
> > > > - *A* short_tests/CMT/uniform_flow/uniform.usr
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-58> (232)
> > > > - *M* short_tests/NekTests.py
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-59> (8)
> > > > - *M* short_tests/axi/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-60> (2)
> > > > - *M* short_tests/conj_ht/conj_ht.par
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-61> (1)
> > > > - *M* short_tests/ethier/ethier.par
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-62> (2)
> > > > - *M* short_tests/lib/nekBinBuild.py
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-63> (24)
> > > > - *M* short_tests/lib/nekFileConfig.py
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-64> (5)
> > > > - *M* short_tests/lowMach_test/lowMach_test.par
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-65> (5)
> > > > - *M* tools/amg_hypre/README.md
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-66> (7)
> > > > - *M* tools/amg_hypre/hypre/install
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-67> (3)
> > > > - *M* tools/amg_hypre/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-68> (9)
> > > > - *D* tools/avg/avg.c
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-69> (231)
> > > > - *A* tools/exo2nek/3rd_party/install
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-70> (27)
> > > > - *M* tools/exo2nek/README.md
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-71> (23)
> > > > - *M* tools/exo2nek/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-72> (2)
> > > > - *M* tools/exo2nek/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-73> (18)
> > > > - *M* tools/genbox/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-74> (6)
> > > > - *M* tools/genbox/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-75> (2)
> > > > - *M* tools/genmap/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-76> (4)
> > > > - *M* tools/genmap/genmap.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-77> (2)
> > > > - *M* tools/genmap/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-78> (2)
> > > > - *M* tools/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-79> (14)
> > > > - *M* tools/maketools
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-80> (34)
> > > > - *M* tools/n2to3/SIZE
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-81> (2)
> > > > - *M* tools/n2to3/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-82> (2)
> > > > - *M* tools/nekmerge/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-83> (2)
> > > > - *M* tools/postnek/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-84> (2)
> > > > - *M* tools/prenek/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-85> (2)
> > > > - *M* tools/reatore2/makefile
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-86> (2)
> > > > - *M* tools/reatore2/re2torea.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-87> (2)
> > > > - *M* tools/reatore2/reatore2.f
> > > > <https://github.com/UFCCMT/Nek5000/pull/84/files#diff-88> (2)
> > > >
> > > > Patch Links:
> > > >
> > > > - https://github.com/UFCCMT/Nek5000/pull/84.patch
> > > > - https://github.com/UFCCMT/Nek5000/pull/84.diff
> > > >
> > > > —
> > > > You are receiving this because you are subscribed to this thread.
> > > > Reply to this email directly, view it on GitHub
> > > > <#84>, or mute the thread
> > > > <https://github.com/notifications/unsubscribe-
> auth/AUG6zZ4VnJYxrxOgQ_
> > > WlzL2n9wTqscysks5st1JwgaJpZM4P_QDA>
> > > > .
> > > >
> > >
> > > —
> > > You are receiving this because you authored the thread.
> > > Reply to this email directly, view it on GitHub
> > > <#84 (comment)>,
or
> > mute
> > > the thread
> > > <
> > https://github.com/notifications/unsubscribe-auth/AUG7TLry_
> yS8gmUllj2sRxqDuRnigaqfks5st2UVgaJpZM4P_QDA
> > >
> > > .
> > >
> >
> > —
> > You are receiving this because you commented.
> >
> >
> > Reply to this email directly, view it on GitHub
> > <#84 (comment)>, or
> mute
> > the thread
> > <https://github.com/notifications/unsubscribe-auth/
> AUG6zZj1So69sfufcXTHNVDoFnivx2Y9ks5st2argaJpZM4P_QDA>
>
> > .
> >
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <#84 (comment)>, or
mute
> the thread
> <https://github.com/notifications/unsubscribe-auth/AUG7TOOyuWeb9bTznS-
SyclZv31K8f6Gks5st26tgaJpZM4P_QDA>
> .
>
—
You are receiving this because you commented.
Reply to this email directly, view it on GitHub
<#84 (comment)>, or mute
the thread
<https://github.com/notifications/unsubscribe-auth/AUG6zXBC-jVNiVKB9iUIV_n3AWm0QySIks5st3zygaJpZM4P_QDA>
.
|
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Added particles files. There are some short tests in the short tests folder, but they are mainly meant for people using particles.