109 support for custom certificates needed #119
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* Update to 3.8 because of numpy security update * Remove openpyxl because 3.7 is not supported anymore
* Convert functions to return generators * Update readme * Add more tests * Remove pyrohealth from tests because it is currently not working * Add another type ignore for cuntion * Remove all fhirpathpy import tries * Update example 4 * Change functions used in public tests * Fix problems with trade_rows_for_dataframe_with_ref and mypy issues * Update example 2 * Update example 1 * Fix tqdm text name * Update example 2&4 * Update example 3 * Re-add none case to reset empty lists in fhirpaths
* Remove initial reference name in df_constraints if the search parameter is _id * Add error if there are None values in a DF constraint column * Bump up version because of incompatibility * Add pipe for system only if the first element of the df_contraints is a URL
* Fix the bug by introducing a new variable that contains the domain * Add forgotten regex group and add test
* Add option to have multiple values for df_contraints keys * Working now, I did not remember the structure that should be expected, which also explains why mypy was not happy with it * Fix error for history, since it always expected a string instead of a list of strings * Add conversion to string when adding identifiers * Add more tests * Make tests less time consuming
* Add turn of checks option * Make the continue statement depend on the turn_off_checks variable
…ef (#89) * Merge trade_rows_for_dataframe and trade_rows_for_dataframe_with_ref * Update version * Modify tests * Update notebooks
#90) * Update version * Add the option of adding to the output DF of trade_rows_for_dataframe any input column * Add the option of renaming the columns * Add space in warning * Remove blank lines
* Add merge_on to all dataframe functions * Modify mypy command in github workflows * Add directory for mypy check * Fix file after wrong conflict resolving
* Fix link to part of readme * Add docstring about with_columns * Improve spacing in docstring * Test for mypy * Check if the error depends on 3.10 * Update packages and try again with 3.10 * Set 3.10.6 as py version * Add type ignores * Add type ignores
* Force read request for IDs * Update the bundle processing to go through the resources
* Add the possibility to always save in the study folder * Add new formats to store the downloaded data
* First draft of http caching * Improve docstrings * Add a couple of todos * Add retry option and custom create_key parameter for caching * Sort request params to ensure same order for caching
* Bump up version * Add query_to_dataframe function to ensure compatibility with v0.1.0 * Fix text in examples * Fix parameter inconsistency in query_to_dataframe§ * Update tests with query_to_dataframe * Adjust tests
* Remove the merge on parameter and return one dataframe per resource * Filter out none values directly from the returned records * Modify bundle_to_dataframe to take the union of all processed bundles per resource * Adjust tests * Different outputs for query_to_dataframe * Remove always return dict overwrite, that may kill everything * Update pyproject.toml
Co-authored-by: Giulia Baldini <Giulia.Baldini@uk-essen.de>
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* Add custom session object option Resolves #119
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