PAFcontaminants

Find contaminants in proteomics experiments. You can easily filter proteinGroups.txt from MaxQuant using PAFcontimants.

At the Protein Analysis Faciltiy of the University of Lausanne we have our internal list of contaminants.

Installation

Install from source in R using devtools:

library(devtools)
install_github("UNIL-PAF/PAFcontaminants", build_vignettes = TRUE)

Usage

Look at the vignettes for more information about usage:

browseVignettes(package="PAFcontaminants")