New everything. workshops are not working

UTS-Bioinformatics · Jul 8, 2023 · bbe0ef2 · bbe0ef2
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diff --git a/Gemfile.lock b/Gemfile.lock
@@ -1,98 +1,99 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    activesupport (6.0.3.4)
+    activesupport (6.1.7.4)
       concurrent-ruby (~> 1.0, >= 1.0.2)
-      i18n (>= 0.7, < 2)
-      minitest (~> 5.1)
-      tzinfo (~> 1.1)
-      zeitwerk (~> 2.2, >= 2.2.2)
-    addressable (2.7.0)
-      public_suffix (>= 2.0.2, < 5.0)
+      i18n (>= 1.6, < 2)
+      minitest (>= 5.1)
+      tzinfo (~> 2.0)
+      zeitwerk (~> 2.3)
+    addressable (2.8.4)
+      public_suffix (>= 2.0.2, < 6.0)
     coffee-script (2.4.1)
       coffee-script-source
       execjs
     coffee-script-source (1.11.1)
     colorator (1.1.0)
-    commonmarker (0.17.13)
-      ruby-enum (~> 0.5)
-    concurrent-ruby (1.1.7)
-    dnsruby (1.61.5)
-      simpleidn (~> 0.1)
-    em-websocket (0.5.2)
+    commonmarker (0.23.9)
+    concurrent-ruby (1.2.2)
+    dnsruby (1.70.0)
+      simpleidn (~> 0.2.1)
+    em-websocket (0.5.3)
       eventmachine (>= 0.12.9)
-      http_parser.rb (~> 0.6.0)
-    ethon (0.12.0)
-      ffi (>= 1.3.0)
+      http_parser.rb (~> 0)
+    ethon (0.16.0)
+      ffi (>= 1.15.0)
     eventmachine (1.2.7)
-    execjs (2.7.0)
-    faraday (1.1.0)
-      multipart-post (>= 1.2, < 3)
-      ruby2_keywords
-    ffi (1.13.1)
+    execjs (2.8.1)
+    faraday (2.7.9)
+      faraday-net_http (>= 2.0, < 3.1)
+      ruby2_keywords (>= 0.0.4)
+    faraday-net_http (3.0.2)
+    ffi (1.15.5)
     forwardable-extended (2.6.0)
     gemoji (3.0.1)
-    github-pages (209)
-      github-pages-health-check (= 1.16.1)
-      jekyll (= 3.9.0)
+    github-pages (228)
+      github-pages-health-check (= 1.17.9)
+      jekyll (= 3.9.3)
       jekyll-avatar (= 0.7.0)
       jekyll-coffeescript (= 1.1.1)
-      jekyll-commonmark-ghpages (= 0.1.6)
+      jekyll-commonmark-ghpages (= 0.4.0)
       jekyll-default-layout (= 0.1.4)
       jekyll-feed (= 0.15.1)
       jekyll-gist (= 1.5.0)
       jekyll-github-metadata (= 2.13.0)
+      jekyll-include-cache (= 0.2.1)
       jekyll-mentions (= 1.6.0)
       jekyll-optional-front-matter (= 0.3.2)
       jekyll-paginate (= 1.1.0)
       jekyll-readme-index (= 0.3.0)
       jekyll-redirect-from (= 0.16.0)
       jekyll-relative-links (= 0.6.1)
-      jekyll-remote-theme (= 0.4.2)
+      jekyll-remote-theme (= 0.4.3)
       jekyll-sass-converter (= 1.5.2)
-      jekyll-seo-tag (= 2.6.1)
+      jekyll-seo-tag (= 2.8.0)
       jekyll-sitemap (= 1.4.0)
       jekyll-swiss (= 1.0.0)
-      jekyll-theme-architect (= 0.1.1)
-      jekyll-theme-cayman (= 0.1.1)
-      jekyll-theme-dinky (= 0.1.1)
-      jekyll-theme-hacker (= 0.1.2)
-      jekyll-theme-leap-day (= 0.1.1)
-      jekyll-theme-merlot (= 0.1.1)
-      jekyll-theme-midnight (= 0.1.1)
-      jekyll-theme-minimal (= 0.1.1)
-      jekyll-theme-modernist (= 0.1.1)
-      jekyll-theme-primer (= 0.5.4)
-      jekyll-theme-slate (= 0.1.1)
-      jekyll-theme-tactile (= 0.1.1)
-      jekyll-theme-time-machine (= 0.1.1)
+      jekyll-theme-architect (= 0.2.0)
+      jekyll-theme-cayman (= 0.2.0)
+      jekyll-theme-dinky (= 0.2.0)
+      jekyll-theme-hacker (= 0.2.0)
+      jekyll-theme-leap-day (= 0.2.0)
+      jekyll-theme-merlot (= 0.2.0)
+      jekyll-theme-midnight (= 0.2.0)
+      jekyll-theme-minimal (= 0.2.0)
+      jekyll-theme-modernist (= 0.2.0)
+      jekyll-theme-primer (= 0.6.0)
+      jekyll-theme-slate (= 0.2.0)
+      jekyll-theme-tactile (= 0.2.0)
+      jekyll-theme-time-machine (= 0.2.0)
       jekyll-titles-from-headings (= 0.5.3)
       jemoji (= 0.12.0)
-      kramdown (= 2.3.0)
+      kramdown (= 2.3.2)
       kramdown-parser-gfm (= 1.1.0)
-      liquid (= 4.0.3)
+      liquid (= 4.0.4)
       mercenary (~> 0.3)
       minima (= 2.5.1)
-      nokogiri (>= 1.10.4, < 2.0)
-      rouge (= 3.23.0)
+      nokogiri (>= 1.13.6, < 2.0)
+      rouge (= 3.26.0)
       terminal-table (~> 1.4)
-    github-pages-health-check (1.16.1)
+    github-pages-health-check (1.17.9)
       addressable (~> 2.3)
       dnsruby (~> 1.60)
       octokit (~> 4.0)
-      public_suffix (~> 3.0)
+      public_suffix (>= 3.0, < 5.0)
       typhoeus (~> 1.3)
-    html-pipeline (2.14.0)
+    html-pipeline (2.14.3)
       activesupport (>= 2)
       nokogiri (>= 1.4)
-    http_parser.rb (0.6.0)
-    i18n (0.9.5)
+    http_parser.rb (0.8.0)
+    i18n (1.14.1)
       concurrent-ruby (~> 1.0)
-    jekyll (3.9.0)
+    jekyll (3.9.3)
       addressable (~> 2.4)
       colorator (~> 1.0)
       em-websocket (~> 0.5)
-      i18n (~> 0.7)
+      i18n (>= 0.7, < 2)
       jekyll-sass-converter (~> 1.0)
       jekyll-watch (~> 2.0)
       kramdown (>= 1.17, < 3)
@@ -106,13 +107,13 @@ GEM
     jekyll-coffeescript (1.1.1)
       coffee-script (~> 2.2)
       coffee-script-source (~> 1.11.1)
-    jekyll-commonmark (1.3.1)
-      commonmarker (~> 0.14)
-      jekyll (>= 3.7, < 5.0)
-    jekyll-commonmark-ghpages (0.1.6)
-      commonmarker (~> 0.17.6)
-      jekyll-commonmark (~> 1.2)
-      rouge (>= 2.0, < 4.0)
+    jekyll-commonmark (1.4.0)
+      commonmarker (~> 0.22)
+    jekyll-commonmark-ghpages (0.4.0)
+      commonmarker (~> 0.23.7)
+      jekyll (~> 3.9.0)
+      jekyll-commonmark (~> 1.4.0)
+      rouge (>= 2.0, < 5.0)
     jekyll-default-layout (0.1.4)
       jekyll (~> 3.0)
     jekyll-feed (0.15.1)
@@ -122,6 +123,8 @@ GEM
     jekyll-github-metadata (2.13.0)
       jekyll (>= 3.4, < 5.0)
       octokit (~> 4.0, != 4.4.0)
+    jekyll-include-cache (0.2.1)
+      jekyll (>= 3.7, < 5.0)
     jekyll-mentions (1.6.0)
       html-pipeline (~> 2.3)
       jekyll (>= 3.7, < 5.0)
@@ -134,57 +137,57 @@ GEM
       jekyll (>= 3.3, < 5.0)
     jekyll-relative-links (0.6.1)
       jekyll (>= 3.3, < 5.0)
-    jekyll-remote-theme (0.4.2)
+    jekyll-remote-theme (0.4.3)
       addressable (~> 2.0)
       jekyll (>= 3.5, < 5.0)
       jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0)
       rubyzip (>= 1.3.0, < 3.0)
     jekyll-sass-converter (1.5.2)
       sass (~> 3.4)
-    jekyll-seo-tag (2.6.1)
-      jekyll (>= 3.3, < 5.0)
+    jekyll-seo-tag (2.8.0)
+      jekyll (>= 3.8, < 5.0)
     jekyll-sitemap (1.4.0)
       jekyll (>= 3.7, < 5.0)
     jekyll-swiss (1.0.0)
-    jekyll-theme-architect (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-architect (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-cayman (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-cayman (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-dinky (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-dinky (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-hacker (0.1.2)
+    jekyll-theme-hacker (0.2.0)
       jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-leap-day (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-leap-day (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-merlot (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-merlot (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-midnight (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-midnight (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-minimal (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-minimal (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-modernist (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-modernist (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-primer (0.5.4)
+    jekyll-theme-primer (0.6.0)
       jekyll (> 3.5, < 5.0)
       jekyll-github-metadata (~> 2.9)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-slate (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-slate (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-tactile (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-tactile (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
-    jekyll-theme-time-machine (0.1.1)
-      jekyll (~> 3.5)
+    jekyll-theme-time-machine (0.2.0)
+      jekyll (> 3.5, < 5.0)
       jekyll-seo-tag (~> 2.0)
     jekyll-titles-from-headings (0.5.3)
       jekyll (>= 3.3, < 5.0)
@@ -194,62 +197,60 @@ GEM
       gemoji (~> 3.0)
       html-pipeline (~> 2.2)
       jekyll (>= 3.0, < 5.0)
-    kramdown (2.3.0)
+    kramdown (2.3.2)
       rexml
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
-    liquid (4.0.3)
-    listen (3.3.3)
+    liquid (4.0.4)
+    listen (3.8.0)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
     mercenary (0.3.6)
-    mini_portile2 (2.4.0)
+    mini_portile2 (2.8.2)
     minima (2.5.1)
       jekyll (>= 3.5, < 5.0)
       jekyll-feed (~> 0.9)
       jekyll-seo-tag (~> 2.1)
-    minitest (5.14.2)
-    multipart-post (2.1.1)
-    nokogiri (1.10.10)
-      mini_portile2 (~> 2.4.0)
-    octokit (4.19.0)
-      faraday (>= 0.9)
-      sawyer (~> 0.8.0, >= 0.5.3)
+    minitest (5.18.1)
+    nokogiri (1.13.10)
+      mini_portile2 (~> 2.8.0)
+      racc (~> 1.4)
+    octokit (4.25.1)
+      faraday (>= 1, < 3)
+      sawyer (~> 0.9)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
-    public_suffix (3.1.1)
-    rb-fsevent (0.10.4)
+    public_suffix (4.0.7)
+    racc (1.7.1)
+    rb-fsevent (0.11.2)
     rb-inotify (0.10.1)
       ffi (~> 1.0)
-    rexml (3.2.4)
-    rouge (3.23.0)
-    ruby-enum (0.8.0)
-      i18n
-    ruby2_keywords (0.0.2)
-    rubyzip (2.3.0)
+    rexml (3.2.5)
+    rouge (3.26.0)
+    ruby2_keywords (0.0.5)
+    rubyzip (2.3.2)
     safe_yaml (1.0.5)
     sass (3.7.4)
       sass-listen (~> 4.0.0)
     sass-listen (4.0.0)
       rb-fsevent (~> 0.9, >= 0.9.4)
       rb-inotify (~> 0.9, >= 0.9.7)
-    sawyer (0.8.2)
+    sawyer (0.9.2)
       addressable (>= 2.3.5)
-      faraday (> 0.8, < 2.0)
-    simpleidn (0.1.1)
+      faraday (>= 0.17.3, < 3)
+    simpleidn (0.2.1)
       unf (~> 0.1.4)
     terminal-table (1.8.0)
       unicode-display_width (~> 1.1, >= 1.1.1)
-    thread_safe (0.3.6)
     typhoeus (1.4.0)
       ethon (>= 0.9.0)
-    tzinfo (1.2.8)
-      thread_safe (~> 0.1)
+    tzinfo (2.0.6)
+      concurrent-ruby (~> 1.0)
     unf (0.1.4)
       unf_ext
-    unf_ext (0.0.7.7)
-    unicode-display_width (1.7.0)
-    zeitwerk (2.4.2)
+    unf_ext (0.0.8.2)
+    unicode-display_width (1.8.0)
+    zeitwerk (2.6.8)
 
 PLATFORMS
   ruby

diff --git a/_config.yml b/_config.yml
@@ -22,7 +22,7 @@ title: RBMB research group
 author: A. Faiz
 # email: alen.faiz@uts.edu.au
 description: >- # this means to ignore newlines until "baseurl:"
-  Respiratory Bioinformatics and Molecular Biology at UTS, Sydney
+  RBMB Research Group at UTS, Sydney
 #  Write an awesome description for your new site here. You can edit this
 #  line in _config.yml. It will appear in your document head meta (for
 #  Google search results) and in your feed.xml site description.
@@ -46,6 +46,8 @@ plugins:
 # Excluded items can be processed by explicitly listing the directories or
 # their entries' file path in the `include:` list.
 #
+include:
+  - _pages
 # exclude:
 #   - .sass-cache/
 #   - .jekyll-cache/
@@ -57,3 +59,18 @@ plugins:
 #   - vendor/cache/
 #   - vendor/gems/
 #   - vendor/ruby/
+
+
+# Collections
+collections_dir: "contents"
+collections:
+  drafts:
+    output: false
+  posts:
+    output: true
+  workshops:
+    output: false
+
+
+timezone: Australia/Sydney
+