slurm: add verbose support

UW-GAC · Aug 6, 2019 · 2be4b3a · 2be4b3a
1 parent 98d5b21
commit 2be4b3a
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/TopmedPipeline.py b/TopmedPipeline.py
@@ -817,7 +817,9 @@ def submitJob(self, **kwargs):
         # -- cost
         dockerOpts["--machine"] = theMachine
         dockerOpts["--cost"] = theCost
-
+        # -- verbose
+        if self.verbose:
+            dockerOpts["--verbose"] = "True"
         suboptStr = dictToString(submitOpts)
         dockeroptStr = dictToString(dockerOpts)
 

diff --git a/slurm_cfg.json b/slurm_cfg.json
@@ -83,7 +83,8 @@
             "--mem_limit": null,
             "--working_dir": null,
             "--machine": null,
-            "--cost": null
+            "--cost": null,
+            "--verbose": null
         }
     }
 }