Update docs

docs/api.rst

@@ -13,33 +13,35 @@ Simulation
 =======
 .. automodule:: pysumma.simulation
     :members:
-
-Ensemble
-=======
-.. automodule:: pysumma.ensemble
-    :members:
-
-File Manager
-=========
-.. automodule:: pysumma.file_manager
-    :members:
-
-Decisions
-=========
-.. automodule:: pysumma.decisions
-    :members:
-
-Output Control
-=========
-.. automodule:: pysumma.output_control
-    :members:
-
-Local Param Info
-=========
-.. automodule:: pysumma.local_param_info
-    :members:
-
-Basin Param Info
-=========
-.. automodule:: pysumma.basin_param_info
-    :members:
+    :undoc-members:
+    :show-inheritance:
+
+.. Ensemble
+.. =======
+.. .. automodule:: pysumma.ensemble
+..     :members:
+..
+.. File Manager
+.. =========
+.. .. automodule:: pysumma.file_manager
+..     :members:
+..
+.. Decisions
+.. =========
+.. .. automodule:: pysumma.decisions
+..     :members:
+..
+.. Output Control
+.. =========
+.. .. automodule:: pysumma.output_control
+..     :members:
+..
+.. Local Param Info
+.. =========
+.. .. automodule:: pysumma.local_param_info
+..     :members:
+..
+.. Basin Param Info
+.. =========
+.. .. automodule:: pysumma.basin_param_info
+..     :members:

docs/index.rst

@@ -1,21 +1,25 @@
 .. pysumma documentation
 .. _index:
 
-# pySUMMA
+pySUMMA
+=======
 
 The pySUMMA is a Python wrapper for the manipulation, display and analysis of
 SUMMA model (Structure for Unifying Multiple Modeling Alternatives)
 
 * [SUMMA web site at UCAR ](https://www.rap.ucar.edu/projects/summa)
 
-## pySUMMA intends to provide
+pySUMMA intends to provide
 
- - Get and set model parameters and method (fileManager and Decision file)
- - Run SUMMA
- - Visualize netcdf of SUMMA outputs
+- Get and set model parameters and method (fileManager and Decision file)
+- Run SUMMA
+- Visualize netcdf of SUMMA outputs
 
 Sitemap
 =======
 .. toctree::
     :maxdepth: 3
+
     api
+    source/pysumma.rst
+    source/modules.rst

docs/source/modules.rst

@@ -0,0 +1,7 @@
+pysumma
+=======
+
+.. toctree::
+   :maxdepth: 4
+
+   pysumma

docs/source/pysumma.hydroshare.rst

@@ -0,0 +1,62 @@
+pysumma.hydroshare package
+==========================
+
+Submodules
+----------
+
+pysumma.hydroshare.compat module
+--------------------------------
+
+.. automodule:: pysumma.hydroshare.compat
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.hydroshare.hydroshare module
+------------------------------------
+
+.. automodule:: pysumma.hydroshare.hydroshare
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.hydroshare.progress module
+----------------------------------
+
+.. automodule:: pysumma.hydroshare.progress
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.hydroshare.resource module
+----------------------------------
+
+.. automodule:: pysumma.hydroshare.resource
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.hydroshare.threads module
+---------------------------------
+
+.. automodule:: pysumma.hydroshare.threads
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.hydroshare.utilities module
+-----------------------------------
+
+.. automodule:: pysumma.hydroshare.utilities
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: pysumma.hydroshare
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/pysumma.meta.rst

@@ -0,0 +1,10 @@
+pysumma.meta package
+====================
+
+Module contents
+---------------
+
+.. automodule:: pysumma.meta
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/pysumma.plotting.rst

@@ -0,0 +1,102 @@
+pysumma.plotting package
+========================
+
+Submodules
+----------
+
+pysumma.plotting.energy\_balance module
+---------------------------------------
+
+.. automodule:: pysumma.plotting.energy_balance
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.energybalance module
+-------------------------------------
+
+.. automodule:: pysumma.plotting.energybalance
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.hovmoller module
+---------------------------------
+
+.. automodule:: pysumma.plotting.hovmoller
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.layers module
+------------------------------
+
+.. automodule:: pysumma.plotting.layers
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.plot module
+----------------------------
+
+.. automodule:: pysumma.plotting.plot
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.plotting module
+--------------------------------
+
+.. automodule:: pysumma.plotting.plotting
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.spatial module
+-------------------------------
+
+.. automodule:: pysumma.plotting.spatial
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.timeseries module
+----------------------------------
+
+.. automodule:: pysumma.plotting.timeseries
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.utils module
+-----------------------------
+
+.. automodule:: pysumma.plotting.utils
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.water\_balance module
+--------------------------------------
+
+.. automodule:: pysumma.plotting.water_balance
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pysumma.plotting.waterbalance module
+------------------------------------
+
+.. automodule:: pysumma.plotting.waterbalance
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: pysumma.plotting
+    :members:
+    :undoc-members:
+    :show-inheritance: