A small RJMCMC tracking framework for resolving collisions between Drosophila larvae.
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README.md

README.md

Drosophila Tracker

Repository for publication:
Tim Michels, Dimitri Berh and Xiaoyi Jiang
"An RJMCMC-Based Method for Tracking and Resolving Collisions of Drosophila Larvae"
IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2779141

Example Top row: Selected frames from a raw input sequence produced by the FIM setup.
Bottom row: Tracking result obtained by using the proposed method.

Dependencies:
OpenCV3 (modify the paths in the .pro file)
QT5+QT Creator, since the application was built with qmake

An example of the application's usage will shortly be added to this repository's wiki.